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Report for CCDS23825.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23825.2 Public Mus musculus 10 Prdm1 23 108 98 CCDS HistoryNCBI Gene:12142Re-query CCDS DB by CCDS ID:23825.2See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 23825.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an alternative protein N-terminus that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23825.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105490.2 ENSMUSP00000101129.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105490.2Link to Ensembl Protein Viewer:ENSMUSP00000101129.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105490Re-query CCDS DB by Protein ID:ENSMUSP00000101129
Original member NCBI NM_007548.4 NP_031574.2 Updated not alive Link to Nucleotide Sequence:NM_007548.4Link to Protein Sequence:NP_031574.2Re-query CCDS DB by Nucleotide ID:NM_007548Re-query CCDS DB by Protein ID:NP_031574
Current member NCBI NM_007548.5 NP_031574.2 Accepted alive Link to Nucleotide Sequence:NM_007548.5Link to Protein Sequence:NP_031574.2Re-query CCDS DB by Nucleotide ID:NM_007548Re-query CCDS DB by Protein ID:NP_031574Link to BLAST:NP_031574.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031574.2 823 Q60636-2 823 100% 0 0

Chromosomal Locations for CCDS 23825.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 44439667 44440242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44440659 44440787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44441059 44442164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44446792 44447044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44450119 44450238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44456625 44456870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44458467 44458508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGTTGGATCTTCTCTTGGAAAAACGTGTGGGTACGACCTTGGCTGCCCCCAAGTCTAGCTCCGGCTCCG
TGAAGTTTCAAGGACTGGCAGAGACTGGGATCATGAAAATGGACATGGAGGACGCTGATATGACTTTGTG
GACAGAGGCCGAGTTTGAAGAGAAGTGTACATACATAGTGAACGACCACCCCTGGGATTCCGGCGCTGAC
GGGGGTACTTCTGTTCAAGCCGAGGCATCCTTACCAAGGAACCTGCTTTTCAAGTATGCTGCCAACAACA
GCAAAGAGGTTATTGGCGTGGTAAGTAAGGAGTACATACCGAAGGGAACACGCTTTGGACCCCTCATCGG
TGAAGTCTACACTAATGACACAGTTCCCAAGAATGCCAACAGGAAGTATTTTTGGCGGATCTATTCCAGA
GAGGAGTTCCACCACTTCATTGATGGCTTTAATGAGGAGAAAAGCAACTGGATGCGCTACGTGAATCCAG
CTCACTCTGCCCGGGAGCAAAACCTGGCTGCCTGTCAGAACGGGATGAACATCTACTTCTACACTATTAA
GCCTATCCCTGCCAACCAGGAACTTCTTGTGTGGTATTGTCGGGACTTTGCGGAGAGGCTCCACTACCCT
TATCCTGGAGAGCTCACAGTGATAAATCTCACACAAACGGAAAGCAACCCAAAGCAATACAGTAGTGAGA
AAAATGAACTCTACCCAAAGAGTGTCCCCAAGAGAGAGTACAGCGTGAAAGAAATTCTAAAACTGGACTC
CAATCCCTCCAAAAGGAAGGACATCTACCGTTCCAACATTTCACCCTTCACTTTAGAAAAGGACATGGAT
GGCTTTCGGAAAAATGGGAGCCCCGACATGCCCTTCTACCCTCGGGTGGTTTATCCTATCCGGGCACCTC
TGCCAGAAGACTTTTTGAAAGCGTCCCTGGCCTATGGGATGGAGAGACCCACCTACATAACTCACAGTCC
CCTTCCGTCTTCCACAACTCCAAGTCCCCCTGCGAGCAGCAGCCCGGAGCAGAGCCTTAAGAGCTCCAGC
CCCCACAGCAGCCCGGGAAACACGGTGTCACCCCTGGCGCCAGGCCTCCCAGAACACCGGGACTCCTACT
CCTACTTGAATGTTTCCTATGGTTCCGAGGGCCTGGGCTCCTACCCTGGCTATGCACCTGCCCCCCACCT
CCCACCAGCTTTCATTCCTTCTTACAATGCTCACTACCCCAAGTTCCTGTTGCCACCGTACGGCATTAGT
TCCAATGGCTTGAGCACCATGAACAACATCAATGGTATCAACAACTTCAGCCTCTTCCCTAGGTTGTATC
CCGTCTACAGTAACCTCCTTAGTGGCAGCAGCCTGCCTCATCCCATGCTCAATCCAGCTTCCCTACCGAG
TTCCCTGCCTACCGATGGAGCCCGGAGGCTGCTTCCACCGGAGCACCCCAAAGAGGTGCTTATCCCAGCA
CCCCACAGTGCCTTCTCCCTTACCGGGGCTGCAGCCAGCATGAAGGACGAGAGTAGTCCCCCCAGCGGAT
CTCCAACGGCGGGAACTGCAGCCACGTCAGAACACGTGGTACAACCCAAAGCTACCTCATCAGTGATGGC
GGCCCCCAGCACTGACGGAGCCATGAATCTCATTAAAAACAAACGAAACATGACTGGTTACAAGACTCTT
CCTTACCCTCTGAAGAAACAGAATGGCAAGATCAAGTATGAGTGCAATGTCTGTGCCAAGACGTTCGGTC
AGCTCTCCAACCTGAAGGTCCACCTGAGAGTGCACAGTGGAGAACGGCCTTTCAAGTGCCAGACCTGCAA
CAAGGGTTTTACTCAGCTCGCCCACCTGCAGAAACACTACTTGGTACACACAGGAGAGAAGCCACATGAG
TGCCAGGTCTGCCACAAGAGATTTAGCAGCACAAGCAATCTCAAGACCCACCTTCGATTGCATTCTGGAG
AAAAACCTTACCAATGTAAGGTGTGCCCTGCCAAGTTTACGCAATTTGTGCACCTGAAGCTGCACAAGCG
ACTGCATACCCGGGAGCGGCCTCACAAGTGTGCCCAGTGTCACAAGAGCTACATCCATCTCTGCAGCCTC
AAGGTCCACCTGAAGGGCAACTGCCCTGCGGGCCCAGCTGCTGGGCTGCCTTTGGAGGATCTGACCCGAA
TCAATGAAGAAATTGAGAGGTTCGACATCAGCGACAATGCAGACCGTCTTGAGGACATGGAGGACAGTGT
CGATGTGACCTCCATGGTGGAGAAGGAGATTCTAGCTGTGGTCAGAAAAGAGAAAGAAGAAACCAGTCTG
AAAGTGTCTTTGCAAAGAAACATGGGGAACGGCCTCCTCTCCTCAGGGTGCAGCCTCTATGAGTCATCGG
ACCTGTCCCTCATGAAGTTGCCTCACAGCAACCCACTACCTCTGGTGCCTGTAAAGGTCAAACAAGAAAC
AGTTGAACCGATGGATCCTTAA

Translation (823 aa):
MLDLLLEKRVGTTLAAPKSSSGSVKFQGLAETGIMKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGAD
GGTSVQAEASLPRNLLFKYAANNSKEVIGVVSKEYIPKGTRFGPLIGEVYTNDTVPKNANRKYFWRIYSR
EEFHHFIDGFNEEKSNWMRYVNPAHSAREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAERLHYP
YPGELTVINLTQTESNPKQYSSEKNELYPKSVPKREYSVKEILKLDSNPSKRKDIYRSNISPFTLEKDMD
GFRKNGSPDMPFYPRVVYPIRAPLPEDFLKASLAYGMERPTYITHSPLPSSTTPSPPASSSPEQSLKSSS
PHSSPGNTVSPLAPGLPEHRDSYSYLNVSYGSEGLGSYPGYAPAPHLPPAFIPSYNAHYPKFLLPPYGIS
SNGLSTMNNINGINNFSLFPRLYPVYSNLLSGSSLPHPMLNPASLPSSLPTDGARRLLPPEHPKEVLIPA
PHSAFSLTGAAASMKDESSPPSGSPTAGTAATSEHVVQPKATSSVMAAPSTDGAMNLIKNKRNMTGYKTL
PYPLKKQNGKIKYECNVCAKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHE
CQVCHKRFSSTSNLKTHLRLHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKCAQCHKSYIHLCSL
KVHLKGNCPAGPAAGLPLEDLTRINEEIERFDISDNADRLEDMEDSVDVTSMVEKEILAVVRKEKEETSL
KVSLQRNMGNGLLSSGCSLYESSDLSLMKLPHSNPLPLVPVKVKQETVEPMDP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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