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Report for CCDS23124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23124.1 Public Mus musculus 9 Cd3d 23 108 98 CCDS HistoryNCBI Gene:12500Re-query CCDS DB by CCDS ID:23124.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034602.8 ENSMUSP00000034602.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034602.8Link to Ensembl Protein Viewer:ENSMUSP00000034602.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034602Re-query CCDS DB by Protein ID:ENSMUSP00000034602
Original member Current member NCBI NM_013487.3 NP_038515.3 Accepted alive Link to Nucleotide Sequence:NM_013487.3Link to Protein Sequence:NP_038515.3Re-query CCDS DB by Nucleotide ID:NM_013487Re-query CCDS DB by Protein ID:NP_038515Link to BLAST:NP_038515.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038515.3 173 P04235 173 100% 0 0

Chromosomal Locations for CCDS 23124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44981886 44981940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44984970 44985188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44985604 44985735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44986057 44986100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44986273 44986344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGAACACAGCGGGATTCTGGCTAGTCTGATACTGATTGCTGTTCTCCCCCAAGGGAGCCCCTTCAAGA
TACAAGTGACCGAATATGAGGACAAAGTATTTGTGACCTGCAATACCAGCGTCATGCATCTAGATGGAAC
GGTGGAAGGATGGTTTGCAAAGAATAAAACACTCAACTTGGGCAAAGGCGTTCTGGACCCACGAGGGATA
TATCTGTGTAATGGGACAGAGCAGCTGGCAAAGGTGGTGTCTTCTGTGCAAGTCCATTACCGAATGTGCC
AGAACTGTGTGGAGCTAGACTCGGGCACCATGGCTGGTGTCATCTTCATTGACCTCATCGCAACTCTGCT
CCTGGCTTTGGGCGTCTACTGCTTTGCAGGACATGAGACCGGAAGGCCTTCTGGGGCTGCTGAGGTTCAA
GCACTGCTGAAGAATGAGCAGCTGTATCAGCCTCTTCGAGATCGTGAAGATACCCAGTACAGCCGTCTTG
GAGGGAACTGGCCCCGGAACAAGAAATCTTAA

Translation (173 aa):
MEHSGILASLILIAVLPQGSPFKIQVTEYEDKVFVTCNTSVMHLDGTVEGWFAKNKTLNLGKGVLDPRGI
YLCNGTEQLAKVVSSVQVHYRMCQNCVELDSGTMAGVIFIDLIATLLLALGVYCFAGHETGRPSGAAEVQ
ALLKNEQLYQPLRDREDTQYSRLGGNWPRNKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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