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Report for CCDS21840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21840.1 Public Mus musculus 7 Coro1a 23 108 98 CCDS HistoryNCBI Gene:12721Re-query CCDS DB by CCDS ID:21840.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032949.13 ENSMUSP00000032949.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032949.13Link to Ensembl Protein Viewer:ENSMUSP00000032949.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032949Re-query CCDS DB by Protein ID:ENSMUSP00000032949
Original member Current member EBI ENSMUST00000106364.7 ENSMUSP00000101972.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106364.7Link to Ensembl Protein Viewer:ENSMUSP00000101972.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106364Re-query CCDS DB by Protein ID:ENSMUSP00000101972
Original member NCBI NM_001301374.1 NP_001288303.1 Updated not alive Link to Nucleotide Sequence:NM_001301374.1Link to Protein Sequence:NP_001288303.1Re-query CCDS DB by Nucleotide ID:NM_001301374Re-query CCDS DB by Protein ID:NP_001288303
Current member NCBI NM_001301374.2 NP_001288303.1 Accepted alive Link to Nucleotide Sequence:NM_001301374.2Link to Protein Sequence:NP_001288303.1Re-query CCDS DB by Nucleotide ID:NM_001301374Re-query CCDS DB by Protein ID:NP_001288303Link to BLAST:NP_001288303.1
Original member NCBI NM_009898.3 NP_034028.1 Updated not alive Link to Nucleotide Sequence:NM_009898.3Link to Protein Sequence:NP_034028.1Re-query CCDS DB by Nucleotide ID:NM_009898Re-query CCDS DB by Protein ID:NP_034028
Current member NCBI NM_009898.4 NP_034028.1 Accepted alive Link to Nucleotide Sequence:NM_009898.4Link to Protein Sequence:NP_034028.1Re-query CCDS DB by Nucleotide ID:NM_009898Re-query CCDS DB by Protein ID:NP_034028Link to BLAST:NP_034028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288303.1 461 O89053 461 100% 0 0
NP_034028.1 461 O89053 461 100% 0 0

Chromosomal Locations for CCDS 21840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126699881 126699985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126700257 126700472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126700584 126700641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126700740 126700885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126700992 126701096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126701290 126701409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126701518 126701702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126701790 126701919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126702006 126702128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126702976 126703173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAGCCGGCAGGTGGTTCGCTCCAGCAAATTCCGCCACGTGTTTGGACAGCCAGCCAAGGCTGACCAGT
GCTATGAGGATGTGCGCGTCTCACAAACCACTTGGGACAGTGGCTTCTGCGCTGTCAACCCCAAGTTCAT
GGCTCTGATCTGTGAGGCCAGTGGGGGAGGGGCCTTCCTGGTGCTACCCCTAGGCAAGACTGGACGAGTA
GACAAGAACGTGCCCCTGGTCTGCGGCCACACTGCCCCTGTGCTAGACATCGCCTGGTGTCCACACAATG
ACAATGTCATTGCCAGTGGCTCTGAGGACTGCACAGTTATGGTGTGGGAGATCCCGGATGGGGGCCTGGT
GCTGCCCTTGCGGGAGCCTGTCATCACCTTGGAGGGCCACACCAAGAGGGTTGGCATCGTGGCCTGGCAC
CCCACAGCCCAGAATGTGCTTCTCAGCGCAGGTTGTGACAATGTGATCCTGGTGTGGGACGTGGGCACTG
GGGCAGCTGTGCTGACGCTGGGCCCGGATGTGCACCCGGACACAATCTACAGCGTGGACTGGAGCCGGGA
CGGTGCTCTCATCTGCACCTCCTGCCGTGACAAGCGAGTTCGTGTCATCGAGCCTCGCAAAGGCACTGTT
GTGGCTGAAAAGGACCGTCCCCATGAGGGGACTCGGCCAGTGCACGCTGTGTTTGTGTCAGAAGGGAAGA
TTCTAACCACGGGTTTCAGTCGCATGAGTGAGCGGCAGGTGGCGCTGTGGGACACAAAGCACCTGGAGGA
GCCACTGTCCCTGCAGGAGCTGGACACAAGCAGCGGAGTCCTGCTACCTTTTTTTGATCCTGATACCAAC
ATTGTCTACCTCTGTGGCAAGGGTGACAGCTCTATCCGGTATTTTGAGATCACTTCTGAGGCTCCGTTCC
TGCATTATCTTTCCATGTTCAGTTCCAAGGAGTCTCAGCGTGGTATGGGCTACATGCCCAAACGTGGCCT
GGAAGTGAATAAGTGTGAGATTGCCAGATTCTATAAGCTTCATGAGCGGAAGTGTGAGCCCATTGCCATG
ACAGTGCCTAGAAAGTCGGACCTGTTCCAGGAGGACCTGTATCCGCCCACTGCAGGACCCGACCCTGCCC
TCACAGCTGAGGAATGGCTGGGTGGTCGGGATGCTGGCCCCCTCCTCATTTCCCTCAAGGATGGCTACGT
GCCCCCAAAGAGCAGGGAGCTGAGGGTCAACAGGGGCCTGGACAGCGCTCGCAGAAGAGCTACACCAGAG
CCCAGCGGCACGCCCAGCTCGGATACCGTGTCAAGGCTGGAGGAGGACGTGAGGAATCTGAACGCCATAG
TGCAAAAGCTACAAGAGCGCCTGGACAGGCTGGAGGAGACTGTTCAGGCCAAGTAG

Translation (461 aa):
MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV
DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH
PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV
VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN
IVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKCEPIAM
TVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPKSRELRVNRGLDSARRRATPE
PSGTPSSDTVSRLEEDVRNLNAIVQKLQERLDRLEETVQAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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