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Report for CCDS23172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23172.1 Public Mus musculus 9 Cryab 23 108 98 CCDS HistoryNCBI Gene:12955Re-query CCDS DB by CCDS ID:23172.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034562.8 ENSMUSP00000034562.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034562.8Link to Ensembl Protein Viewer:ENSMUSP00000034562.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034562Re-query CCDS DB by Protein ID:ENSMUSP00000034562
Original member Current member EBI ENSMUST00000214962.1 ENSMUSP00000149759.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214962.1Link to Ensembl Protein Viewer:ENSMUSP00000149759.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214962Re-query CCDS DB by Protein ID:ENSMUSP00000149759
Original member Current member EBI ENSMUST00000217475.1 ENSMUSP00000149803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217475.1Link to Ensembl Protein Viewer:ENSMUSP00000149803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217475Re-query CCDS DB by Protein ID:ENSMUSP00000149803
Original member Current member EBI ENSMUST00000216755.1 ENSMUSP00000150669.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216755.1Link to Ensembl Protein Viewer:ENSMUSP00000150669.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216755Re-query CCDS DB by Protein ID:ENSMUSP00000150669
Original member Current member NCBI NM_001289782.1 NP_001276711.1 Accepted alive Link to Nucleotide Sequence:NM_001289782.1Link to Protein Sequence:NP_001276711.1Re-query CCDS DB by Nucleotide ID:NM_001289782Re-query CCDS DB by Protein ID:NP_001276711Link to BLAST:NP_001276711.1
Original member Current member NCBI NM_001289784.1 NP_001276713.1 Accepted alive Link to Nucleotide Sequence:NM_001289784.1Link to Protein Sequence:NP_001276713.1Re-query CCDS DB by Nucleotide ID:NM_001289784Re-query CCDS DB by Protein ID:NP_001276713Link to BLAST:NP_001276713.1
Original member Current member NCBI NM_001289785.1 NP_001276714.1 Accepted alive Link to Nucleotide Sequence:NM_001289785.1Link to Protein Sequence:NP_001276714.1Re-query CCDS DB by Nucleotide ID:NM_001289785Re-query CCDS DB by Protein ID:NP_001276714Link to BLAST:NP_001276714.1
Original member Current member NCBI NM_009964.3 NP_034094.1 Accepted alive Link to Nucleotide Sequence:NM_009964.3Link to Protein Sequence:NP_034094.1Re-query CCDS DB by Nucleotide ID:NM_009964Re-query CCDS DB by Protein ID:NP_034094Link to BLAST:NP_034094.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276711.1 175 P23927 175 100% 0 0
NP_001276713.1 175 P23927 175 100% 0 0
NP_001276714.1 175 P23927 175 100% 0 0
NP_034094.1 175 P23927 175 100% 0 0

Chromosomal Locations for CCDS 23172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50753277 50753477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50754512 50754634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50756292 50756495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGACATCGCCATCCACCACCCCTGGATCCGGCGCCCCTTCTTCCCCTTCCACTCCCCAAGCCGCCTCT
TCGACCAGTTCTTCGGAGAGCACCTGTTGGAGTCTGACCTCTTCTCAACAGCCACTTCCCTGAGCCCCTT
CTACCTTCGGCCACCCTCCTTCCTGCGGGCACCCAGCTGGATTGACACCGGACTCTCAGAGATGCGTTTG
GAGAAGGACAGATTCTCTGTGAATCTGGACGTGAAGCACTTCTCTCCGGAGGAACTCAAAGTCAAGGTTC
TGGGGGACGTGATTGAGGTCCACGGCAAGCACGAAGAACGCCAGGACGAACATGGCTTCATCTCCAGGGA
GTTCCACAGGAAGTACCGGATCCCAGCCGATGTGGATCCTCTCACCATCACTTCATCCCTGTCATCTGAT
GGAGTCCTCACTGTGAATGGACCAAGGAAACAGGTGTCTGGCCCTGAGCGCACCATTCCCATCACCCGTG
AAGAGAAGCCTGCTGTCGCCGCAGCCCCTAAGAAGTAG

Translation (175 aa):
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFSTATSLSPFYLRPPSFLRAPSWIDTGLSEMRL
EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD
GVLTVNGPRKQVSGPERTIPITREEKPAVAAAPKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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