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Report for CCDS27612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27612.1 Public Mus musculus 15 Csf2rb 23 108 98 CCDS HistoryNCBI Gene:12983Re-query CCDS DB by CCDS ID:27612.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096355.3 ENSMUSP00000094082.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096355.3Link to Ensembl Protein Viewer:ENSMUSP00000094082.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096355Re-query CCDS DB by Protein ID:ENSMUSP00000094082
Original member Current member EBI ENSMUST00000230264.2 ENSMUSP00000154836.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230264.2Link to Ensembl Protein Viewer:ENSMUSP00000154836.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230264Re-query CCDS DB by Protein ID:ENSMUSP00000154836
Original member Current member NCBI NM_001358854.1 NP_001345783.1 Accepted alive Link to Nucleotide Sequence:NM_001358854.1Link to Protein Sequence:NP_001345783.1Re-query CCDS DB by Nucleotide ID:NM_001358854Re-query CCDS DB by Protein ID:NP_001345783Link to BLAST:NP_001345783.1
Original member Current member NCBI NM_007780.4 NP_031806.3 Accepted alive Link to Nucleotide Sequence:NM_007780.4Link to Protein Sequence:NP_031806.3Re-query CCDS DB by Nucleotide ID:NM_007780Re-query CCDS DB by Protein ID:NP_031806Link to BLAST:NP_031806.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345783.1 896 P26955 896 100% 0 0
NP_031806.3 896 P26955 896 100% 0 0

Chromosomal Locations for CCDS 27612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78335207 78335294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78336348 78336471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78338802 78338989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78340444 78340601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78340680 78340848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78341338 78341473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78341594 78341754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78344485 78344624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78345399 78345558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78346383 78346473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78346677 78346734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78347374 78347477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78348072 78349185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2691 nt):
ATGGACCAGCAAATGGCACTCACATGGGGGCTGTGCTACATGGCACTGGTGGCTCTCTGTTGGGGACACG
GGGTGACAGAGGCAGAAGAAACGGTCCCTCTGAAGACTCTGCAGTGCTACAATGACTACACCAACCACAT
CATCTGCAGCTGGGCGGACACAGAGGATGCCCAGGGGCTAATCAACATGACCCTCTATCACCAGCTAGAG
AAAAAACAGCCAGTGTCCTGTGAGCTCAGTGAGGAACTCATGTGGTCAGAGTGCCCGTCATCCCACCGCT
GTGTGCCCAGAAGATGTGTCATCCCCTATACACGATTTTCCATCACAAACGAAGACTACTACTCCTTCCG
GCCAGATAGTGATCTGGGCATCCAGCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAG
AACGTCAGCATCAGCTCCTCTGAGGATCGTTTCCTGCTGGAGTGGAGTGTGTCCCTTGGGGATGCCCAGG
TCTCCTGGCTTTCATCAAAGGACATAGAGTTTGAGGTGGCTTATAAGCGGCTTCAGGACTCCTGGGAGGA
TGCCTACAGTCTCCACACTAGCAAATTTCAGGTGAATTTCGAGCCAAAGCTATTCCTACCCAACAGCATC
TATGCTGCCCGTGTGCGCACTCGGCTGTCCCCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCC
CAGAGGTTCACTGGGACTCCCAGCCAGGGGACAAGGCCCAGCCACAGAACCTTCAATGCTTCTTTGATGG
GATCCAGTCCCTCCACTGCTCCTGGGAGGTGTGGACCCAGACGACTGGCTCTGTTTCCTTTGGGCTCTTC
TATCGCCCCAGCCCTGTAGCTCCGGAGGAGAAATGCTCTCCGGTGGTGAAGGAGCCGCCGGGGGCCAGTG
TCTACACCCGCTACCATTGCAGTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGTACACAGTCTCTGT
TAAGCACCTGGAACAAGGGAAGTTCATCATGAGCTATAACCACATCCAGATGGAGCCTCCAACCCTCAAC
CTGACCAAGAACAGAGACAGCTACAGCCTGCATTGGGAAACTCAGAAGATGGCTTACTCATTCATTGAGC
ACACATTCCAGGTCCAGTACAAGAAGAAATCGGACAGCTGGGAGGACAGCAAGACAGAGAACCTAGATCG
AGCCCATAGCATGGACCTCTCCCAGCTGGAGCCAGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCCC
ATCTCTAACTACGATGGGATCTGGAGCAAGTGGAGCGAAGAGTACACTTGGAAGACTGACTGGGTGATGC
CCACGCTGTGGATAGTCCTCATCCTGGTCTTTCTCATCCTCACCTTGCTCCTGATCCTTCGCTTTGGCTG
TGTCTCTGTATACAGGACGTACAGGAAGTGGAAGGAAAAGATCCCCAACCCCAGCAAGAGCCTCCTGTTC
CAGGATGGAGGTAAAGGTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCCACTAAGAACCCCGCTCTCC
AGGGGCCACAGAGCAGGCTTCTTGCTGAGCAACAGGGGGAGTCATATGCACATTTGGAAGACAACAACGT
GTCACCTCTCACTATAGAGGACCCTAATATAATTCGAGTTCCACCATCCGGGCCTGATACAACCCCAGCT
GCCTCATCCGAATCCACAGAGCAACTTCCCAATGTTCAAGTAGAGGGACCAACTCCTAACAGACCTAGGA
AGCAATTACCCAGCTTTGACTTCAATGGGCCCTACCTGGGGCCTCCCCAATCCCACTCTCTGCCTGATCT
CCCAGACCAGCTGGGTTCCCCCCAGGTGGGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCCTTGGAGTAC
ATGTGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCATTGTCCCAGGTGATGGGGCAGGGCCAGGCTA
TGGATGTGCAGTGTGGGTCCAGCCTGGAGACCTCAGGGAGCCCTTCTGTGGAGCCAAAGGAGAACCCTCC
AGTTGAGCTGAGCATGGAGGAACAGGAGGCACGGGACAACCCAGTGACTCTGCCCATAAGCTCTGGGGGC
CCTGAGGGCAGTATGATGGCCTCTGATTATGTCACTCCTGGAGATCCGGTGCTCACTCTGCCCACAGGGC
CCCTGTCTACCTCTCTGGGCCCCTCTCTAGGGTTGCCCTCAGCCCAAAGCCCCAGTCTCTGTCTTAAGCT
GCCCAGGGTCCCCTCTGGAAGCCCAGCTCTAGGGCCACCAGGGTTTGAGGACTATGTGGAGCTGCCTCCA
AGTGTGAGCCAGGCTGCCAAGTCCCCTCCAGGCCATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGA
TCCCAGGAGAGCCCAGGGAGGAAGTGGGCCCAGCATCCCCACATCCCGAAGGCCTCCTTGTTCTTCAGCA
GGTTGGGGACTACTGCTTCCTCCCTGGCCTGGGACCTGGCTCCCTCTCACCACACAGTAAGCCACCCTCT
CCAAGTCTGTGTTCTGAGACTGAGGACCTAGTCCAGGACTTGTCTGTCAAAAAGTTTCCCTATCAGCCCA
TGCCCCAGGCGCCAGCCATTCAGTTTTTCAAGTCCCTAAAGCATCAGGACTACCTGTCCCTGCCCCCTTG
GGACAATAGCCAGTCTGGGAAGGTGTGCTGA

Translation (896 aa):
MDQQMALTWGLCYMALVALCWGHGVTEAEETVPLKTLQCYNDYTNHIICSWADTEDAQGLINMTLYHQLE
KKQPVSCELSEELMWSECPSSHRCVPRRCVIPYTRFSITNEDYYSFRPDSDLGIQLMVPLAQNVQPPLPK
NVSISSSEDRFLLEWSVSLGDAQVSWLSSKDIEFEVAYKRLQDSWEDAYSLHTSKFQVNFEPKLFLPNSI
YAARVRTRLSPGSSLSGRPSRWSPEVHWDSQPGDKAQPQNLQCFFDGIQSLHCSWEVWTQTTGSVSFGLF
YRPSPVAPEEKCSPVVKEPPGASVYTRYHCSLPVPEPSAHSQYTVSVKHLEQGKFIMSYNHIQMEPPTLN
LTKNRDSYSLHWETQKMAYSFIEHTFQVQYKKKSDSWEDSKTENLDRAHSMDLSQLEPDTSYCARVRVKP
ISNYDGIWSKWSEEYTWKTDWVMPTLWIVLILVFLILTLLLILRFGCVSVYRTYRKWKEKIPNPSKSLLF
QDGGKGLWPPGSMAAFATKNPALQGPQSRLLAEQQGESYAHLEDNNVSPLTIEDPNIIRVPPSGPDTTPA
ASSESTEQLPNVQVEGPTPNRPRKQLPSFDFNGPYLGPPQSHSLPDLPDQLGSPQVGGSLKPALPGSLEY
MCLPPGGQAQLVPLSQVMGQGQAMDVQCGSSLETSGSPSVEPKENPPVELSMEEQEARDNPVTLPISSGG
PEGSMMASDYVTPGDPVLTLPTGPLSTSLGPSLGLPSAQSPSLCLKLPRVPSGSPALGPPGFEDYVELPP
SVSQAAKSPPGHPAPPVASSPTVIPGEPREEVGPASPHPEGLLVLQQVGDYCFLPGLGPGSLSPHSKPPS
PSLCSETEDLVQDLSVKKFPYQPMPQAPAIQFFKSLKHQDYLSLPPWDNSQSGKVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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