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Report for CCDS23964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23964.1 Public Mus musculus 10 Cstb 23 108 98 CCDS HistoryNCBI Gene:13014Re-query CCDS DB by CCDS ID:23964.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005185.7 ENSMUSP00000005185.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005185.7Link to Ensembl Protein Viewer:ENSMUSP00000005185.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005185Re-query CCDS DB by Protein ID:ENSMUSP00000005185
Original member Current member NCBI NM_007793.3 NP_031819.1 Accepted alive Link to Nucleotide Sequence:NM_007793.3Link to Protein Sequence:NP_031819.1Re-query CCDS DB by Nucleotide ID:NM_007793Re-query CCDS DB by Protein ID:NP_031819Link to BLAST:NP_031819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031819.1 98 Q62426 98 100% 0 0

Chromosomal Locations for CCDS 23964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78425792 78425857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78426927 78427028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78427311 78427439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGATGTGTGGCGCGCCATCTGCCACAATGCCAGCCACGGCCGAGACGCAGGAGGTCGCCGACCAGGTGA
AG
TCCCAGCTTGAATCGAAAGAAAATCAGAAGTTTGATGTCTTTAAAGCCATATCCTTCAAGAGACAGAT
A
GTGGCTGGCACCAACCTCTTCATCAAGGTTGATGTTGGTGGAGATAAATGCGTGCACTTGAGGGTGTTT
CAA
CCCCTCCCCCATGAAAACAAGCCTTTGACCCTGTCTTCCTATCAGACCAACAAAGAAAGGCACGATG
AG
CTCTCCTACTTCTGA


Translation (98 aa):
MMCGAPSATMPATAETQEVADQVKSQLESKENQKFDVFKAISFKRQIVAGTNLFIKVDVGGDKCVHLRVF
Q
PLPHENKPLTLSSYQTNKERHDELSYF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser