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Report for CCDS21009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21009.1 Public Mus musculus 7 Cyp2a12 23 108 98 CCDS HistoryNCBI Gene:13085Re-query CCDS DB by CCDS ID:21009.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075552.6 ENSMUSP00000074990.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075552.6Link to Ensembl Protein Viewer:ENSMUSP00000074990.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075552Re-query CCDS DB by Protein ID:ENSMUSP00000074990
Original member Current member NCBI NM_133657.1 NP_598418.1 Accepted alive Link to Nucleotide Sequence:NM_133657.1Link to Protein Sequence:NP_598418.1Re-query CCDS DB by Nucleotide ID:NM_133657Re-query CCDS DB by Protein ID:NP_598418Link to BLAST:NP_598418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598418.1 492 P56593 492 100% 0 0

Chromosomal Locations for CCDS 21009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27029106 27029282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27029562 27029724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27030736 27030885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27031102 27031262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27032487 27032663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27034026 27034164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27034611 27034798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27035311 27035452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27036465 27036646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGCTGGGCTCAGGGCTGCTCCTCCTAGCCATTCTGGCCTTCCTGAGTGTGATGGTCTTGGTGTCTGTCT
GG
CAGCAGAAAATCAGGGGGAAGTTGCCCCCAGGACCCATTCCTTTGCCTTTCATTGGAAATTACCTGCA
A
CTGAATAGAAAAGATGTATACAGCTCCATCACACAGCTCCAAGAGCACTATGGCCCTGTGTTCACCATC
CAC
CTTGGGCCTCGCCGGGTTGTGGTGCTTTATGGATACGATGCAGTCAAAGAGGCTTTGGTGGACCACG
CT
GAGGAGTTCAGTGGACGAGGCGAACAGGCCACCTTTAATACACTCTTCAAAGGCTATGGTGTGGCATT
C
AGCAATGGGGAACGAGCCAAACAACTCAGACGCTTCTCTATAGCCACACTGAGAGATTTCGGCATGGGC
AAG
CGAGGTGTGGAGGAGCGCATCCAGGAGGAGGCAGGCTGTTTGATCAAGATGTTGCAGGGCACTTGTG
GA
GCCCCCATTGACCCCACCATCTACCTGAGCAAAACAGCCTCCAATGTCATTAGCTCCATTGTCTTCGG
C
GACCGCTTCAACTATGAGGACAAAGAGTTCCTGTCACTGCTGCAGATGATGGGTCAAGTGAACAAATTT
GCT
GCTTCACCCACAGGGCAGCTCTATGACATGTTCCATTCAGTTATGAAGTACCTGCCCGGACCACAGC
AA
CAGATCATCAAGGATTCTCATAAACTGGAAGACTTCATGATACAGAAAGTGAAGCAGAACCAGAGTAC
C
CTGGACCCCAATTCCCCACGAGACTTCATTGACTCCTTTCTCATCCACATGCAAAAGGAGAAATATGTT
AAT
TCAGAGTTTCACATGAAGAACCTAGTGATGACATCATTGAACCTCTTCTTTGCTGGGTCTGAGACAG
TC
AGCTCCACACTACGATATGGCTTCCTGCTACTAATGAAGCATCCAGATGTAGAGGCCAAGGTCCATGA
G
GAGATTGACCGAGTGATTGGCAGGAACCGACAGCCCCAATATGAGGACCATATGAAGATGCCCTACACC
CAG
GCTGTGATCAATGAGATCCAGAGATTTTCTAACTTTGCTCCCTTGGGCATTCCTCGAAGGATTACCA
AG
GATACTTCCTTCCGTGGCTTCTTCCTCCCCAAGGGCACTGAAGTGTTTCCTATACTGGGTTCTCTGAT
G
ACAGACCCAAAGTTCTTCTCTAGCCCCAAAGACTTCAACCCACAGCACTTCCTGGATGACAAGGGACAG
TTG
AAGAAGATCCCTGCTTTTCTGCCCTTTTCCACTGGGAAGCGATTCTGCTTGGGAGACAGCCTGGCTA
AG
ATGGAGCTGTTCCTGTTCTTCACCACCATCTTGCAGAACTTCCGTTTCAAGTTCCCAAGGAAACTAGA
A
GATATCAATGAGTCCCCTACACCAGAGGGGTTTACCAGGATCATACCAAAGTACACCATGAGCTTCGTG
CCC
ATCTGA


Translation (492 aa):
MLGSGLLLLAILAFLSVMVLVSVWQQKIRGKLPPGPIPLPFIGNYLQLNRKDVYSSITQLQEHYGPVFTI
H
LGPRRVVVLYGYDAVKEALVDHAEEFSGRGEQATFNTLFKGY
GVAFSNGERAKQLRRFSIATLRDFGMG
K
RGVEERIQEEAGCLIKMLQGTC
GAPIDPTIYLSKTASNVISSIVFGDRFNYEDKEFLSLLQMMGQVNKF
A
ASPTGQ
LYDMFHSVMKYLPGPQQQIIKDSHKLEDFMIQKVKQNQSTLDPNSPRDFIDSFLIHMQKEKYV
N
SEFHMKNLVMTSLNLFFAGSETVSSTLRYGFLLLMKHPDVE
AKVHEEIDRVIGRNRQPQYEDHMKMPYT
Q
AVINEIQRFSNFAPLGIPRRITKDTSFRGFFLPK
GTEVFPILGSLMTDPKFFSSPKDFNPQHFLDDKGQ
L
KKIPAFLPFST
GKRFCLGDSLAKMELFLFFTTILQNFRFKFPRKLEDINESPTPEGFTRIIPKYTMSFV
P
I




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