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Report for CCDS93616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93616.1 Public Homo sapiens 4 SMIM43 24 110 108 CCDS HistoryNCBI Gene:132332Re-query CCDS DB by CCDS ID:93616.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 93616.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000643802.2 ENSP00000495721.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000643802.2Link to Ensembl Protein Viewer:ENSP00000495721.1Re-query CCDS DB by Nucleotide ID:ENST00000643802Re-query CCDS DB by Protein ID:ENSP00000495721
Original member Current member EBI ENST00000643663.2 ENSP00000495936.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643663.2Link to Ensembl Protein Viewer:ENSP00000495936.2Re-query CCDS DB by Nucleotide ID:ENST00000643663Re-query CCDS DB by Protein ID:ENSP00000495936
Original member Current member NCBI NM_001384332.1 NP_001371261.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384332.1Link to Protein Sequence:NP_001371261.1Re-query CCDS DB by Nucleotide ID:NM_001384332Re-query CCDS DB by Protein ID:NP_001371261Link to BLAST:NP_001371261.1
Original member Current member NCBI NM_001384333.1 NP_001371262.1 Accepted alive Link to Nucleotide Sequence:NM_001384333.1Link to Protein Sequence:NP_001371262.1Re-query CCDS DB by Nucleotide ID:NM_001384333Re-query CCDS DB by Protein ID:NP_001371262Link to BLAST:NP_001371262.1
Original member Current member NCBI NM_001384334.1 NP_001371263.1 Accepted alive Link to Nucleotide Sequence:NM_001384334.1Link to Protein Sequence:NP_001371263.1Re-query CCDS DB by Nucleotide ID:NM_001384334Re-query CCDS DB by Protein ID:NP_001371263Link to BLAST:NP_001371263.1

Chromosomal Locations for CCDS 93616.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121764914 121765105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (192 nt):
ATGGAGTGGGAACTCAACTTGCTGCTCTACCTGGCGCTCTTCTTCTTCCTGCTCTTCTTACTTTTCCTCC
TGCTCTTCGTGGTCATCAAGCAGCTGAAGAACTCCGTGGCCAACACGGCCGGGGCGCTCCAGCCCGGGCG
CCTCTCGGTGCACCGCGAGCCTTGGGGCTTCTCCCGAGAGCAAGCGGTGTGA

Translation (63 aa):
MEWELNLLLYLALFFFLLFLLFLLLFVVIKQLKNSVANTAGALQPGRLSVHREPWGFSREQAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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