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Report for CCDS37732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37732.1 Public Mus musculus 18 Colec12 23 108 98 CCDS HistoryNCBI Gene:140792Re-query CCDS DB by CCDS ID:37732.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37732.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234965.1 ENSMUSP00000157132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234965.1Link to Ensembl Protein Viewer:ENSMUSP00000157132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234965Re-query CCDS DB by Protein ID:ENSMUSP00000157132
Original member Current member NCBI NM_130449.2 NP_569716.2 Accepted alive Link to Nucleotide Sequence:NM_130449.2Link to Protein Sequence:NP_569716.2Re-query CCDS DB by Nucleotide ID:NM_130449Re-query CCDS DB by Protein ID:NP_569716Link to BLAST:NP_569716.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_569716.2 742 Q8K4Q8 742 100% 0 0

Chromosomal Locations for CCDS 37732.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 9707753 9707759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9720921 9720971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9840239 9840361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9846787 9846885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9848104 9849150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9858546 9859034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9859838 9859974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9866744 9866853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9874789 9874934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9876988 9877007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGAAAGACGACTTTGCAGAGGAAGAGGAGGTGCAGTCCTTCGGTTACAAGAGGTTTGGTATTCAGGAGG
GGACACAGTGTACCAAATGTAAAAATAACTGGGCACTGAAGTTTTCGATTGTATTATTATACATTCTGTG
TGCCTTACTGACCATCACAGTAGCCATTTTGGGATATAAAGTTGTAGAGAAAATGGACAATGTCACAGAT
GGCATGGAGACATCTCACCAGACTTATGACAACAAACTCACTGCTGTGGAAAGTGACCTGAAGAAATTAG
GGGATCAAGCTGGGAAGAAAGCTCTAAGTACCAACTCTGAGCTTTCTACCTTCAGATCAGATATTCTGGA
TCTCCGTCAACAACTTCAGGAGATCACAGAAAAAACCAGCAAGAACAAAGATACGCTGGAGAAGTTGCAA
GCAAATGGGGACTCATTGGTTGATAGGCAGAGTCAGCTGAAGGAAACTCTGCAGAATAATTCTTTCCTCA
TTACCACCGTCAACAAAACACTCCAGGCATATAATGGCTATGTCACAAATCTGCAACAAGATACTAGTGT
GCTCCAGGGCAATCTGCAGAGCCAAATGTATTCTCAGAGCGTGGTTATCATGAACCTCAACAACCTGAAC
CTAACCCAGGTTCAGCAGAGGAACCTTATCTCAAATCTGCAGCAGTCTGTGGATGACACAAGCCTGGCCA
TCCAGCGAATTAAGAATGATTTCCAAAATCTGCAGCAGGTTTTCCTTCAAGCCAAGAAGGACACCGATTG
GCTAAAGGAAAAAGTACAGAGCTTGCAGACATTGGCTGCCAACAACTCTGCCCTGGCCAAAGCCAACAAT
GACACCCTAGAGGATATGAATAGCCAGCTCAGCTCATTCACAGGTCAGATGGACAACATTACCACTATCT
CACAGGCCAACGAGCAGAGCCTGAAAGACCTTCAGGACTTACACAAGGATACAGAAAATAGAACAGCTGT
CAAGTTCAGCCAACTTGAGGAACGCTTCCAGGTCTTTGAGACAGATATTGTGAACATCATTAGCAACATC
AGCTACACAGCCCATCACCTGAGGACACTGACCAGCAATCTGAATGATGTTAGGACCACATGCACAGACA
CCTTGACCAGACACACGGATGACCTGACCTCCTTGAATAACACACTAGTCAACATCCGCTTGGATTCTAT
TTCTCTCAGGATGCAGCAAGACATGATGAGGTCAAAGTTAGACACTGAAGTGGCCAACTTATCAGTGGTT
ATGGAAGAGATGAAACTGGTTGACTCCAAGCACGGTCAGCTCATCAAGAACTTTACCATTCTACAAGGTC
CTCCTGGCCCCAGAGGTCCAAAAGGTGACAGAGGATCTCAGGGACCACCTGGTCCAACTGGCAACAAGGG
ACAGAAAGGAGAGAAGGGAGAGCCTGGTCCACCTGGCCCTGCGGGTGAGAGGGGCACAATTGGACCAGTC
GGCCCTCCTGGAGAGCGTGGCAGCAAAGGATCCAAAGGCTCACAGGGTCCCAAAGGATCTCGTGGGTCCC
CAGGGAAGCCTGGCCCTCAAGGACCTAGTGGGGACCCAGGACCACCAGGTCCACCAGGCAAGGATGGACT
CCCTGGCCCTCAGGGCCCTCCTGGCTTCCAGGGACTACAGGGCACTGTGGGTGAGCCTGGAGTACCTGGA
CCTCGGGGGTTGCCAGGCTTGCCAGGGGTGCCAGGCATGCCTGGGCCTAAGGGACCACCTGGCCCTCCAG
GCCCCTCAGGAGCAATGGAGCCATTGGCTCTGCAGAATGAACCAACCCCAGCATCAGAGGTCAACGGATG
TCCGCCTCACTGGAAGAACTTCACAGATAAATGCTACTATTTTTCATTGGAAAAAGAAATTTTTGAAGAT
GCTAAGCTTTTCTGTGAAGACAAATCTTCCCATCTCGTTTTCATAAACTCAAGAGAAGAACAGCAATGGA
TAAAAAAGCATACCGTGGGGAGAGAAAGCCATTGGATCGGCCTCACAGACTCAGAACAGGAAAGCGAATG
GAAGTGGCTAGACGGGTCACCTGTTGATTACAAAAACTGGAAAGCTGGACAACCAGATAACTGGGGCAGT
GGCCATGGGCCAGGAGAAGACTGTGCTGGCTTGATTTACGCAGGACAGTGGAATGACTTCCAGTGTGATG
AAATCAATAACTTCATTTGTGAGAAGGAAAGGGAGGCAGTACCATCATCCATATTATAA

Translation (742 aa):
MKDDFAEEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIVLLYILCALLTITVAILGYKVVEKMDNVTD
GMETSHQTYDNKLTAVESDLKKLGDQAGKKALSTNSELSTFRSDILDLRQQLQEITEKTSKNKDTLEKLQ
ANGDSLVDRQSQLKETLQNNSFLITTVNKTLQAYNGYVTNLQQDTSVLQGNLQSQMYSQSVVIMNLNNLN
LTQVQQRNLISNLQQSVDDTSLAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQTLAANNSALAKANN
DTLEDMNSQLSSFTGQMDNITTISQANEQSLKDLQDLHKDTENRTAVKFSQLEERFQVFETDIVNIISNI
SYTAHHLRTLTSNLNDVRTTCTDTLTRHTDDLTSLNNTLVNIRLDSISLRMQQDMMRSKLDTEVANLSVV
MEEMKLVDSKHGQLIKNFTILQGPPGPRGPKGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGTIGPV
GPPGERGSKGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKDGLPGPQGPPGFQGLQGTVGEPGVPG
PRGLPGLPGVPGMPGPKGPPGPPGPSGAMEPLALQNEPTPASEVNGCPPHWKNFTDKCYYFSLEKEIFED
AKLFCEDKSSHLVFINSREEQQWIKKHTVGRESHWIGLTDSEQESEWKWLDGSPVDYKNWKAGQPDNWGS
GHGPGEDCAGLIYAGQWNDFQCDEINNFICEKEREAVPSSIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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