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Report for CCDS19624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19624.1 Public Mus musculus 5 Dtx1 23 108 98 CCDS HistoryNCBI Gene:14357Re-query CCDS DB by CCDS ID:19624.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031607.6 ENSMUSP00000031607.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031607.6Link to Ensembl Protein Viewer:ENSMUSP00000031607.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031607Re-query CCDS DB by Protein ID:ENSMUSP00000031607
Original member NCBI NM_008052.3 NP_032078.2 Updated not alive Link to Nucleotide Sequence:NM_008052.3Link to Protein Sequence:NP_032078.2Re-query CCDS DB by Nucleotide ID:NM_008052Re-query CCDS DB by Protein ID:NP_032078
Current member NCBI NM_008052.4 NP_032078.2 Accepted alive Link to Nucleotide Sequence:NM_008052.4Link to Protein Sequence:NP_032078.2Re-query CCDS DB by Nucleotide ID:NM_008052Re-query CCDS DB by Protein ID:NP_032078Link to BLAST:NP_032078.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032078.2 627 Q61010-1 627 100% 0 0

Chromosomal Locations for CCDS 19624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120681248 120681472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120682121 120682210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120682304 120682465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120682580 120682738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120683061 120683122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120683295 120683456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120683687 120683748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120694410 120695112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120710055 120710313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGTCACGGCCAGGCCAAGGTGTGATGGTGCCGGTGAACGGGCTGGGCTTCCCGCCGCAGAACGTGGCCA
GGGTGGTGGTGTGGGAGTGGCTCAATGAGCACAGCCGCTGGCGACCCTACACGGCCACCGTGTGCCACCA
CATCGAGAATGTTCTTAAGGAGGATGCCCGGGGCTCTGTGGTCCTTGGCCAGGTGGACGCCCAGCTGGTG
CCCTACATCATCGACCTACAATCCATGCATCAGTTCCGGCAAGACACAGGTACCATGCGGCCGGTGCGAC
GCAACTTCTACGATCCATCGTCGGCGCCGGGCAAGGGCATCGTGTGGGAATGGGAGAACGACGGCGGGGC
GTGGACGGCCTACGACATGGACATCTGCATCACCATCCAGAACGCGTACGAGAAGCAGCACCCGTGGCTC
GACCTCTCATCGCTCGGCTTCTGCTACCTCATCTACTTCAACAGCATGTCCCAGATGAACCGCCAGACGC
GCCGCCGCCGCCGCCTGCGCCGTCGCCTGGACCTGGCTTACCCGCTCACTGTCGGCTCCATTCCCAAGTC
GCAATCCTGGCCCGTGGGAGCCAGCTCGGGTCAGCCCTGCTCCTGTCAGCAGTGCCTGCTGGTCAACAGC
ACGCGCGCCGCCTCCAACGCCATCCTGGCCTCGCAGCGCCGCAAGGCTCCCATTGCGCCAGCCGCGCCTC
CAGCGCCCCCTCCGCCCCCGCCGCCGCTGCCACCCGGAGGACCTCCGGGTGCGCTCGTTGTGCGCCCCAG
CGCCACTTTCGCCGGAGCTGCGCTCTGGGCCGCACCTGCCACCGGCCCCACGGAGCCTGCGCCGCCTCCA
GGAGTTCCCCCAAGGAGCCCTAGTGCCCCCAACGGAGCGCCCACACCGGGCCAAAACAACCTCAGTCGAC
CAGGACCACAGAGGTCCACCAGCGTCAGCGCACGCGCCTCTATCCCGCCTGGGGTTCCGGCGCTCCCCGT
GAAGAACTTGAATGGCACTGGCCCTGTCCACCCAGCCTTGGCAGGGATGACCGGGATCCTGCTGTGTGCA
GCGGGGCTGCCGGTGTGCCTGACACGAGCACCCAAACCCATCCTGCACCCACCACCAGTAAGCAAAAGCG
ACGTGAAGCCTGTGCCTGGAGTGCCCGGCGTGTGCCGCAAGACCAAGAAGAAACACCTCAAGAAAAGCAA
GAATCCTGAGGATGTGGTTCGGAGGTACATGCAGAAGGTGAAAAACCCGCCTGATGAGGACTGTACCATT
TGCATGGAGCGGCTGGTCACAGCATCTGGCTATGAGGGCGTGCTCCGAAACAAGAGTGTGCGGCCCGAGC
TTGTGGGCCGCCTGGGCCGCTGCGGCCACATGTATCACCTGCTCTGCCTGGTGGCCATGTACTCCAATGG
CAACAAGGATGGCAGCCTGCAGTGTCCAACCTGCAAAGCCATCTACGGGGAGAAGACAGGGACACAGCCA
CCAGGGAAGATGGAGTTTCACCTCATCCCGCACTCGCTGCCTGGTTTTGCAGACACCCAGACGATCCGCA
TCGTCTATGACATCCCCACGGGCATCCAGGGCCCTGAACATCCCAACCCAGGCAAGAAGTTCACAGCCAG
AGGCTTCCCTCGCCACTGCTACCTACCCAACAATGAGAAGGGCCGAAAGGTGCTGAGATTGCTCATCACC
GCCTGGGAACGCAGACTCATCTTCACTATCGGAACATCCAACACCACGGGCGAGTCGGACACCGTGGTGT
GGAACGAGATTCACCACAAGACGGAGTTTGGTTCCAACCTCACTGGTCACGGCTACCCCGACGCCAGCTA
CCTAGACAACGTGCTGGCTGAGCTCACCGCCCAGGGGGTTTCTGAGGCCATGGCCAAGGCCTGA

Translation (627 aa):
MSRPGQGVMVPVNGLGFPPQNVARVVVWEWLNEHSRWRPYTATVCHHIENVLKEDARGSVVLGQVDAQLV
PYIIDLQSMHQFRQDTGTMRPVRRNFYDPSSAPGKGIVWEWENDGGAWTAYDMDICITIQNAYEKQHPWL
DLSSLGFCYLIYFNSMSQMNRQTRRRRRLRRRLDLAYPLTVGSIPKSQSWPVGASSGQPCSCQQCLLVNS
TRAASNAILASQRRKAPIAPAAPPAPPPPPPPLPPGGPPGALVVRPSATFAGAALWAAPATGPTEPAPPP
GVPPRSPSAPNGAPTPGQNNLSRPGPQRSTSVSARASIPPGVPALPVKNLNGTGPVHPALAGMTGILLCA
AGLPVCLTRAPKPILHPPPVSKSDVKPVPGVPGVCRKTKKKHLKKSKNPEDVVRRYMQKVKNPPDEDCTI
CMERLVTASGYEGVLRNKSVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPTCKAIYGEKTGTQP
PGKMEFHLIPHSLPGFADTQTIRIVYDIPTGIQGPEHPNPGKKFTARGFPRHCYLPNNEKGRKVLRLLIT
AWERRLIFTIGTSNTTGESDTVVWNEIHHKTEFGSNLTGHGYPDASYLDNVLAELTAQGVSEAMAKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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