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Report for CCDS36036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36036.1 Public Mus musculus 10 Hal 23 108 98 CCDS HistoryNCBI Gene:15109Re-query CCDS DB by CCDS ID:36036.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129421.7 ENSMUSP00000123336.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129421.7Link to Ensembl Protein Viewer:ENSMUSP00000123336.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129421Re-query CCDS DB by Protein ID:ENSMUSP00000123336
Original member Current member NCBI NM_010401.4 NP_034531.1 Accepted alive Link to Nucleotide Sequence:NM_010401.4Link to Protein Sequence:NP_034531.1Re-query CCDS DB by Nucleotide ID:NM_010401Re-query CCDS DB by Protein ID:NP_034531Link to BLAST:NP_034531.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034531.1 657 P35492 657 100% 0 0

Chromosomal Locations for CCDS 36036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93489131 93489377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93489874 93489934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93490040 93490067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93490747 93490821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93490915 93490987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93491099 93491165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93491810 93491847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93492453 93492578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93494611 93494750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93496583 93496630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93497475 93497622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93498759 93498854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93498956 93499014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93500617 93500697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93503262 93503327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93503404 93503569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93507415 93507549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93514034 93514142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93514259 93514328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93516182 93516322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGCCTAGGTACACAGTGCACGTGCGTGGGGAATGGCTGGCGGTGCCCTGTCAGGATGGGAAGCTCACTG
TTGGCTGGCTGGGCCGTGAGGCTGTGCGACGCTACATGAAGAACAAACCGGACAATGGTGGCTTCACTTC
GGTGGATGAAGTGCAATTCCTTGTGCATCGGTGCAAGGGCCTGGGCCTGCTGGACAATGAGGACGAGCTG
GAGGTGGCCTTAGAGGACAATGAGTTCGTAGAAGTGGTGATTGAAGGTGATGTGATGTCTCCTGATTTCA
TTCCGTCGCAGCCAGAAGGAGTTTTCCTATACAGCAAATACCGGGAGCCTGAAAAATACATTGCCCTAGA
TGGGGACAGTCTGAGCACAGAGGATCTGGTCAACCTGGGCAAGGGACGTTACAAGATAAAGCTCACTTCA
ATTGCTGAGAAGAAAGTGCAGCAGTCCCGGGAGGTCATCGACAGCATCATCAAAGAAAGAACAGTTGTTT
ATGGCATCACCACAGGTTTTGGAAAATTTGCTAGAACTGTAATCCCTGCCAATAAGCTACAGGAGCTTCA
AGTCAACTTAGTCCGTTCCCATTCTTCAGGTGTTGGGAAACCACTCAGTCCTGAGAGGTGTCGGATGCTC
TTGGCTTTGAGGATCAACGTCTTAGCCAAAGGTTACAGTGGGATTTCCTTGGAGACGCTGAAACAAGTTA
TTGAAGCATTTAATGCCTCCTGCCTGTCCTATGTTCCAGAGAAAGGAACTGTGGGTGCCAGCGGAGACCT
TGCCCCACTCTCTCATCTTGCTCTGGGGCTCATCGGAGAAGGAAAGATGTGGTCCCCGAAGAGTGGCTGG
GCAGATGCTAAATATGTTCTAGAAGCCCATGGACTGAAACCAATTGTCTTGAAACCAAAAGAAGGCCTGG
CACTCATCAATGGGACACAGATGATCACTTCCCTGGGCTGTGAAGCCCTGGAGCGAGCCAGCGCCATTGC
CCGGCAAGCTGATATTGTGGCTGCCTTGACCCTGGAGGTGCTGAAGGGCACCACCAAAGCCTTCGATACC
GACATCCATGCTGTCCGACCTCACCGTGGGCAAATTGAAGTTGCTTTCCGATTCCGGTCCCTCCTGGACT
CGGATCACCACCCATCAGAAATCGCAGAAAGCCACAGGTTCTGCGATCGTGTTCAGGACGCGTACACCTT
ACGCTGCTGTCCACAGGTCCACGGTGTGGTGAACGACACAATAGCCTTTGTGAAGGACATCATCACTACA
GAACTGAACAGCGCCACAGACAATCCTATGGTCTTTGCCAGTCGAGGGGAGACAATTTCAGGAGGAAACT
TCCATGGTGAATACCCAGCCAAAGCCCTGGACTATTTGGCCATTGGTGTCCATGAACTTGCGGCAATTAG
TGAAAGAAGAATCGAAAGGCTGTGTAATCCTTCCCTCAGCGAGCTGCCTGCCTTCCTGGTGGCTGAAGGA
GGTCTCAATTCTGGGTTCATGATAGCCCACTGCACCGCAGCAGCCCTGGTGTCTGAGAGCAAGGCTCTGT
GCCACCCTTCATCTGTGGACTCACTCTCGACCAGTGCTGCTACAGAAGACCACGTCTCCATGGGAGGATG
GGCAGCCAGGAAAGCCCTCAGGGTCGTCGAGCACGTGGAACAAGTGCTAGCCATTGAGCTTCTCGCGGCC
TGCCAGGGTATAGAGTTTCTGCGCCCCCTGAAAACAACCACTCCGCTGGAGAAGGTGTACGACCTGGTGC
GCTCCGTAGTAAGGCCCTGGATAAAAGATCGCTTCATGGCCCCGGACATTGAGGCAGCACACAGGTTGCT
TCTTGACCAAAAGGTTTGGGAGGTTGCCGCACCGTACATCGAGAAATACAGAATGGAGCACATTCCGGAA
TCCAGACCGCTTTCTCCAACAGCGTTTTCACTAGAATCTCTCCGAAAGAACTCAGCCACAATCCCAGAGT
CTGACGATCTTTAA

Translation (657 aa):
MPRYTVHVRGEWLAVPCQDGKLTVGWLGREAVRRYMKNKPDNGGFTSVDEVQFLVHRCKGLGLLDNEDEL
EVALEDNEFVEVVIEGDVMSPDFIPSQPEGVFLYSKYREPEKYIALDGDSLSTEDLVNLGKGRYKIKLTS
IAEKKVQQSREVIDSIIKERTVVYGITTGFGKFARTVIPANKLQELQVNLVRSHSSGVGKPLSPERCRML
LALRINVLAKGYSGISLETLKQVIEAFNASCLSYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGW
ADAKYVLEAHGLKPIVLKPKEGLALINGTQMITSLGCEALERASAIARQADIVAALTLEVLKGTTKAFDT
DIHAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIAFVKDIITT
ELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIERLCNPSLSELPAFLVAEG
GLNSGFMIAHCTAAALVSESKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVVEHVEQVLAIELLAA
CQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLDQKVWEVAAPYIEKYRMEHIPE
SRPLSPTAFSLESLRKNSATIPESDDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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