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Report for CCDS27848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27848.1 Public Mus musculus 15 Nr4a1 23 108 98 CCDS HistoryNCBI Gene:15370Re-query CCDS DB by CCDS ID:27848.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023779.7 ENSMUSP00000023779.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023779.7Link to Ensembl Protein Viewer:ENSMUSP00000023779.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023779Re-query CCDS DB by Protein ID:ENSMUSP00000023779
Original member Current member EBI ENSMUST00000228985.1 ENSMUSP00000155225.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228985.1Link to Ensembl Protein Viewer:ENSMUSP00000155225.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228985Re-query CCDS DB by Protein ID:ENSMUSP00000155225
Original member NCBI NM_010444.2 NP_034574.1 Updated not alive Link to Nucleotide Sequence:NM_010444.2Link to Protein Sequence:NP_034574.1Re-query CCDS DB by Nucleotide ID:NM_010444Re-query CCDS DB by Protein ID:NP_034574
Current member NCBI NM_010444.3 NP_034574.1 Accepted alive Link to Nucleotide Sequence:NM_010444.3Link to Protein Sequence:NP_034574.1Re-query CCDS DB by Nucleotide ID:NM_010444Re-query CCDS DB by Protein ID:NP_034574Link to BLAST:NP_034574.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034574.1 601 P12813 601 100% 0 0

Chromosomal Locations for CCDS 27848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101270085 101270969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101271736 101271865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101272153 101272304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101272718 101272920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101273015 101273193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101273996 101274252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGCCCTGTATTCAAGCTCAATATGGAACACCAGCAACGAGCCCAGGACCGCGTGACCACCTGACCGGTG
ATCCCCTGGCCCTTGAGTTCGGCAAGCCTACCATGGACCTGGCCAGCCCCGAGACAGCACCTGCCGCACC
TGCTACACTGCCCAGCTTCAGCACCTTCATGGACGGGTACACCGGAGAGTTTGACACCTTCCTCTACCAG
CTGCCGGGGACGACCCAGCCGTGCTCCTCAGCTTGTTCCTCTGCCTCCTCCACGTCTTCTTCCTCATCCT
CGGCCACCTCCCCCGCTTCGGCGTCCTTCAAGTTTGAGGACTTCCAGGTGTACGGCTGCTACCCGGGCAC
CCTGAGCGGCCCATTAGATGAGACCCTATCCTCCAGCGGCTCTGAGTACTATGGCAGTCCCTGCTCAGCC
CCCTCGCCATCTACACCCAACTTCCAGCCGTCCCAGCTTTCTCCCTGGGACGGCTCATTTGGCCACTTCT
CCCCGAGCCAGACTTATGAAGGCCTCTGGGCATGGACAGAGCAGTTGCCTAAGGCTTCTTCAGGGCCTCC
GCCACCTCCAACCTTCTTCTCCTTCAGTCCTCCCACTGGCCCCAGCCCCAGCCTGGCCCAGAGTTCTCTG
AAATTGTTCCCACCACCAGCCACCCACCAGCTTGGGGAGGGGGAGAGCTATTCCATGCCAGCAGCTTTCC
CCGGCTTGGCACCCACCTCTCCGAACCGTGACACTTCCGGCATTCTGGACGCACCCGTGACCTCCACCAA
GTCCCGGAGCGGGGCTTCAGGTGGCAGCGAGGGCCGCTGTGCAGTCTGTGGTGACAATGCTTCGTGTCAG
CACTATGGGGTCCGCACCTGTGAGGGCTGCAAGGGCTTCTTCAAGCGCACAGTACAGAAAAGCGCCAAGT
ACATCTGCCTGGCAAACAAGGATTGCCCTGTGGACAAGAGGCGGCGGAACCGCTGCCAGTTCTGCCGCTT
CCAGAAGTGCCTGGCTGTGGGCATGGTGAAGGAAGTTGTACGGACAGACAGCCTAAAAGGGCGGCGGGGC
CGGCTACCTTCAAAACCCAAGCAGCCTCCAGATGCCTCCCCTACCAATCTTCTCACTTCCCTCATCCGGG
CACACTTGGACTCCGGGCCTAGCACTGCCAAATTGGACTATTCCAAGTTCCAGGAACTGGTGCTGCCCCG
CTTCGGGAAGGAAGATGCCGGTGACGTGCAACAATTTTATGACTTGCTCTCTGGTTCCCTGGACGTTATC
CGAAAGTGGGCAGAAAAAATCCCTGGCTTCATTGAGCTTTGCCCAGGAGACCAAGACCTGTTGCTAGAGT
CTGCCTTCCTGGAACTCTTCATCCTCCGCCTGGCATACCGATCTAAACCCGGTGAGGGGAAGCTCATCTT
CTGCTCAGGCCTGGTACTACACCAGCTGCAGTGTGCCCGTGGCTTTGGTGATTGGATTGACAACATCCTG
GCCTTCTCACGGTCCCTGCACAGCTTGGGTGTTGATGTTCCCGCCTTTGCCTGCCTGTCCGCTCTGGTCC
TCATCACTGATCGACACGGGCTCCAGGACCCTCGTCGGGTGGAAGAGCTGCAGAATCGCATTGCTAGCTG
TCTGAAGGAGCACATGGCTACCGTGGCAGGAGACCCACAGCCGGCCAGCTGCCTGTCACGTCTGCTGGGC
AAACTGCCTGAGCTTCGGACCCTGTGCACTCAAGGCCTGCAGCGCATCTTTTGCCTCAAGTTGGAGGACT
TGGTACCCCCTCCACCTATTGTGGACAAGATCTTTATGGACACATTGTCTTTCTGA

Translation (601 aa):
MPCIQAQYGTPATSPGPRDHLTGDPLALEFGKPTMDLASPETAPAAPATLPSFSTFMDGYTGEFDTFLYQ
LPGTTQPCSSACSSASSTSSSSSSATSPASASFKFEDFQVYGCYPGTLSGPLDETLSSSGSEYYGSPCSA
PSPSTPNFQPSQLSPWDGSFGHFSPSQTYEGLWAWTEQLPKASSGPPPPPTFFSFSPPTGPSPSLAQSSL
KLFPPPATHQLGEGESYSMPAAFPGLAPTSPNRDTSGILDAPVTSTKSRSGASGGSEGRCAVCGDNASCQ
HYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG
RLPSKPKQPPDASPTNLLTSLIRAHLDSGPSTAKLDYSKFQELVLPRFGKEDAGDVQQFYDLLSGSLDVI
RKWAEKIPGFIELCPGDQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHQLQCARGFGDWIDNIL
AFSRSLHSLGVDVPAFACLSALVLITDRHGLQDPRRVEELQNRIASCLKEHMATVAGDPQPASCLSRLLG
KLPELRTLCTQGLQRIFCLKLEDLVPPPPIVDKIFMDTLSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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