NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24429.1 Public Mus musculus 11 Hus1 23 108 98 CCDS HistoryNCBI Gene:15574Re-query CCDS DB by CCDS ID:24429.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020683.9 ENSMUSP00000020683.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020683.9Link to Ensembl Protein Viewer:ENSMUSP00000020683.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020683Re-query CCDS DB by Protein ID:ENSMUSP00000020683
Original member Current member EBI ENSMUST00000129115.1 ENSMUSP00000114339.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129115.1Link to Ensembl Protein Viewer:ENSMUSP00000114339.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129115Re-query CCDS DB by Protein ID:ENSMUSP00000114339
Original member Current member NCBI NM_008316.5 NP_032342.1 Accepted alive Link to Nucleotide Sequence:NM_008316.5Link to Protein Sequence:NP_032342.1Re-query CCDS DB by Nucleotide ID:NM_008316Re-query CCDS DB by Protein ID:NP_032342Link to BLAST:NP_032342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032342.1 281 Q8BQY8-2 281 100% 0 0

Chromosomal Locations for CCDS 24429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 8996850 8996932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8998637 8998756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9000077 9000176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9005989 9006063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9007494 9007604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9010241 9010417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9010497 9010624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9011059 9011110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGAAGTTTCGCGCCAAGATCGTGGACCTGGCTTGTCTGAATCATTTCACACGAGTCAGTAACATGATAG
CCAAGCTTGCCAAAACCTGCACCCTCCGCATCAGCCCGGAGAAGCTGAACTTCATCCTGTGCGACAAGCT
GGCCAGTGGAGGCGTGAGCATGTGGTGTGAGCTGGAGCAGGAGAACTTTTTTAGTGAATTTCAAATGGAA
GGAGTCTCTGAAGAAAACAACGAGATTTATTTAGAATTAACGTCGGAAAACTTATCTCGAGCCTTGAAAA
CTGCCCAGAACTCCAGAGCCTTGAAAATCAAGCTGACTAACAAACACTTTCCCTGTCTTACCGTGTCTGT
AGAGCTGCAGGTGTCTTCATCGAGCAGCAGCAGAATCGTGGTGCATGATATCCCCATAAAGGTTCTTCCG
AGAAGACTGTGGAAGGACTTACAAGAACCCTCCATCCCAGACTGTGACGTCAGTATTTGCTTACCAGCCT
TGAAGATGATGAAGAGTGTTGTGGAAAAAATGAGAAACATCAGCAATCAGCTTGTGATTGAAGCAAACCT
AAAGGGAGAATTAAACCTAAAGATAGAAACTGAGTTAGTGTGTGTGACTACTCATTTTAAGGATCTTGAA
AACCCTCTATTACCCTCTGACAGTGTCTCTCAAAACAGACACCCAGAAGACATGGCCAAGGTGCACATTG
ACATAAAGAAACTCCTCCAGTTTCTTGCCGGACAGCAAGTGACTCCCACCAAGGCAGTGTGCAATATTGT
GAATAACAGAACTGTTCATTTTGATTTGCTCCTGGAAGACGTCTCCCTTCAGTATTTCATCCCAGCCTTG
TCCTAG

Translation (281 aa):
MKFRAKIVDLACLNHFTRVSNMIAKLAKTCTLRISPEKLNFILCDKLASGGVSMWCELEQENFFSEFQME
GVSEENNEIYLELTSENLSRALKTAQNSRALKIKLTNKHFPCLTVSVELQVSSSSSSRIVVHDIPIKVLP
RRLWKDLQEPSIPDCDVSICLPALKMMKSVVEKMRNISNQLVIEANLKGELNLKIETELVCVTTHFKDLE
NPLLPSDSVSQNRHPEDMAKVHIDIKKLLQFLAGQQVTPTKAVCNIVNNRTVHFDLLLEDVSLQYFIPAL
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH