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Report for CCDS15037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15037.1 Public Mus musculus 1 Igfbp5 23 108 98 CCDS HistoryNCBI Gene:16011Re-query CCDS DB by CCDS ID:15037.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027377.8 ENSMUSP00000027377.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027377.8Link to Ensembl Protein Viewer:ENSMUSP00000027377.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027377Re-query CCDS DB by Protein ID:ENSMUSP00000027377
Original member Current member NCBI NM_010518.2 NP_034648.2 Accepted alive Link to Nucleotide Sequence:NM_010518.2Link to Protein Sequence:NP_034648.2Re-query CCDS DB by Nucleotide ID:NM_010518Re-query CCDS DB by Protein ID:NP_034648Link to BLAST:NP_034648.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034648.2 271 Q07079 271 100% 0 0

Chromosomal Locations for CCDS 15037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72862377 72862508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72863143 72863262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72863851 72864080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72873806 72874139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGTGATCAGCGTGGTCCTCCTGCTGCTGGCCGCCTATGCCGTACCGGCTCAAGGCCTGGGTTCTTTCG
TGCACTGTGAACCCTGCGACGAGAAAGCTCTGTCCATGTGTCCCCCCAGCCCTCTGGGCTGTGAGCTGGT
CAAAGAGCCCGGCTGTGGCTGCTGCATGACTTGCGCCCTGGCGGAGGGACAGTCGTGTGGCGTCTACACG
GAGCGCTGCGCCCAGGGTTTGCGCTGCCTCCCCCGGCAGGATGAGGAGAAGCCGCTGCACGCCCTGCTGC
ACGGCCGCGGGGTTTGCCTCAACGAAAAGAGCTACGGCGAGCAAACCAAGATAGAGAGAGACTCTCGGGA
ACACGAGGAACCCACCACCTCCGAGATGGCTGAAGAGACCTACTCCCCCAAGGTCTTCCGGCCCAAGCAC
ACTCGCATTTCCGAGCTGAAGGCTGAGGCTGTGAAGAAGGACCGCAGAAAGAAGCTGACCCAGTCCAAGT
TTGTGGGGGGTGCAGAGAACACTGCCCACCCCAGAGTCATCCCTGCACCTGAGATGAGACAGGAATCCGA
ACAAGGCCCCTGCCGCAGACACATGGAAGCTTCCCTCCAGGAGTTCAAAGCCAGCCCACGCATGGTGCCC
CGTGCTGTGTACCTGCCCAACTGTGACCGCAAAGGATTCTACAAGAGAAAGCAGTGTAAGCCCTCCCGTG
GCCGCAAACGTGGCATCTGCTGGTGTGTGGACAAGTACGGAATGAAGCTGCCGGGCATGGAGTACGTGGA
TGGGGACTTTCAGTGCCACGCCTTCGACAGCAGTAACGTTGAGTGA

Translation (271 aa):
MVISVVLLLLAAYAVPAQGLGSFVHCEPCDEKALSMCPPSPLGCELVKEPGCGCCMTCALAEGQSCGVYT
ERCAQGLRCLPRQDEEKPLHALLHGRGVCLNEKSYGEQTKIERDSREHEEPTTSEMAEETYSPKVFRPKH
TRISELKAEAVKKDRRKKLTQSKFVGGAENTAHPRVIPAPEMRQESEQGPCRRHMEASLQEFKASPRMVP
RAVYLPNCDRKGFYKRKQCKPSRGRKRGICWCVDKYGMKLPGMEYVDGDFQCHAFDSSNVE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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