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Report for CCDS29068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29068.1 Public Mus musculus 18 Impact 23 108 98 CCDS HistoryNCBI Gene:16210Re-query CCDS DB by CCDS ID:29068.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025290.6 ENSMUSP00000025290.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025290.6Link to Ensembl Protein Viewer:ENSMUSP00000025290.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025290Re-query CCDS DB by Protein ID:ENSMUSP00000025290
Original member Current member NCBI NM_008378.3 NP_032404.1 Accepted alive Link to Nucleotide Sequence:NM_008378.3Link to Protein Sequence:NP_032404.1Re-query CCDS DB by Nucleotide ID:NM_008378Re-query CCDS DB by Protein ID:NP_032404Link to BLAST:NP_032404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032404.1 318 O55091 318 100% 0 0

Chromosomal Locations for CCDS 29068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12972337 12972372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12974713 12974841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12975979 12976031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12976469 12976531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12982090 12982175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12984239 12984364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12985219 12985316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12986324 12986397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12988295 12988385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12989745 12989879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12990493 12990558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGCTGAAGAGGAAGTAGGGAACAGCCAGAGGCAGAGTGAAGAAATCGAAGCAATGGCAGCCATTTATG
GCGAGGAGTGGTGTGTCATTGATGAAAATGCCAAAATATTTTGTATTAGAGTCACTGACTTCATGGATGA
CCCCAAATGGACACTTTGTTTACAGGTGATGTTGCCAAGTGAGTACCCGGGTACAGCACCGCCTTCTTAT
CAGCTGAACGCTCCCTGGCTGAAAGGGCAAGAACGCGCAGACTTATCGAACAGCCTTGAGGAGATATATG
TCCACAACATGGGTGAATCTATTCTTTACCAGTGGGTGGAGAAAATAAGAGATGCTCTGATACAGAAATC
TCAGATAACCGAGCCAGACCCAGATGTCAAGAAGAAAACTGAAGAGGTTGAGGTTGAGTCCGAAGAAGAC
CCTATTCTAGAGCACCCGCCGGAAAATCCAGTTAAAACATTGGACCTCAAAATCAGTGAAGAAACTCAAC
CAGAAACTGAAGAATTGCCTCCAGTTGCTCATGGCGTTCCTATTACTGACCGAAGGAGCACTTTTCAGGC
TCATGTGGCCCCTGTCGTCTGTCCTGAGCAGGTGAAACTGGTTCTTGCCAAGCTGTACGAGAATAAGAAG
ATTGCCAGCGCCACCCACAACATCTATGCCTACAGGATATTCTGTGAGGATAAACAGACCTTCTTGCAGG
ACTGTGAAGATGATGGAGAAACAGCTGCTGGGGGCCGCCTTCTTCACCTCATGGAGATTTTGAATGTGAA
GAATGTCATGGTGGTGGTGTCCCGCTGGTATGGAGGGATCCTGCTGGGACCTGACCGTTTCAAACACATC
AACAACTGTGCCAGGAACATTCTGGTGGAGAAGAACTTCACGAACACTCCTGACGAGTCAACTAAGAATT
TGGGGAAAAAGAAGGTGAAGAAAGACAAGAAGAAGAATGATCATTAA

Translation (318 aa):
MAEEEVGNSQRQSEEIEAMAAIYGEEWCVIDENAKIFCIRVTDFMDDPKWTLCLQVMLPSEYPGTAPPSY
QLNAPWLKGQERADLSNSLEEIYVHNMGESILYQWVEKIRDALIQKSQITEPDPDVKKKTEEVEVESEED
PILEHPPENPVKTLDLKISEETQPETEELPPVAHGVPITDRRSTFQAHVAPVVCPEQVKLVLAKLYENKK
IASATHNIYAYRIFCEDKQTFLQDCEDDGETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHI
NNCARNILVEKNFTNTPDESTKNLGKKKVKKDKKKNDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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