NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20635.1 Public Mus musculus 6 Kap 23 108 98 CCDS HistoryNCBI Gene:16483Re-query CCDS DB by CCDS ID:20635.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048032.4 ENSMUSP00000041060.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048032.4Link to Ensembl Protein Viewer:ENSMUSP00000041060.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000048032Re-query CCDS DB by Protein ID:ENSMUSP00000041060
Original member Current member NCBI NM_010594.2 NP_034724.1 Accepted alive Link to Nucleotide Sequence:NM_010594.2Link to Protein Sequence:NP_034724.1Re-query CCDS DB by Nucleotide ID:NM_010594Re-query CCDS DB by Protein ID:NP_034724Link to BLAST:NP_034724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034724.1 121 P61110 121 100% 0 0

Chromosomal Locations for CCDS 20635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 133850053 133850105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133851729 133851791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133851918 133852094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133853551 133853623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGATGCTTTTCAAGGTCCTGGTGATCACTGTCTTCTGTGGTCTGACTGTGGCTTTCCCCCTGTCAGAAT
TAGTTTCAATCAATAAAGAACTACAGAATTCAATCATTGACCTACTAAACTCAGTCTTTGACCAACTGGG
ATCATACAGAGGGACAAAAGCTCCTCTAGAGGATTATACAGATGATGATTTAAGCACTGACTCTGAGCAG
ATCATGGACTTCACGCCAGCCGCAAACAAACAGAATTCTGAGTTCTCTACTGATGTTGAGACAGTCTCCT
CCGGCTTTCTGGAAGAATTCACTGAGAACACAGACATCACAGTGAAAATTCCATTAGCTGGGAATCCAGT
CTCCCCTACTTCCTGA

Translation (121 aa):
MMLFKVLVITVFCGLTVAFPLSELVSINKELQNSIIDLLNSVFDQLGSYRGTKAPLEDYTDDDLSTDSEQ
IMDFTPAANKQNSEFSTDVETVSSGFLEEFTENTDITVKIPLAGNPVSPTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH