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Report for CCDS20948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20948.1 Public Mus musculus 7 Kcnn4 23 108 98 CCDS HistoryNCBI Gene:16534Re-query CCDS DB by CCDS ID:20948.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171904.2 ENSMUSP00000133065.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171904.2Link to Ensembl Protein Viewer:ENSMUSP00000133065.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171904Re-query CCDS DB by Protein ID:ENSMUSP00000133065
Original member Current member EBI ENSMUST00000205428.1 ENSMUSP00000146012.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205428.1Link to Ensembl Protein Viewer:ENSMUSP00000146012.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205428Re-query CCDS DB by Protein ID:ENSMUSP00000146012
Original member NCBI NM_001163510.1 NP_001156982.1 Updated not alive Link to Nucleotide Sequence:NM_001163510.1Link to Protein Sequence:NP_001156982.1Re-query CCDS DB by Nucleotide ID:NM_001163510Re-query CCDS DB by Protein ID:NP_001156982
Current member NCBI NM_001163510.2 NP_001156982.1 Accepted alive Link to Nucleotide Sequence:NM_001163510.2Link to Protein Sequence:NP_001156982.1Re-query CCDS DB by Nucleotide ID:NM_001163510Re-query CCDS DB by Protein ID:NP_001156982Link to BLAST:NP_001156982.1
Original member NCBI NM_008433.4 NP_032459.3 Updated not alive Link to Nucleotide Sequence:NM_008433.4Link to Protein Sequence:NP_032459.3Re-query CCDS DB by Nucleotide ID:NM_008433Re-query CCDS DB by Protein ID:NP_032459
Current member NCBI NM_008433.5 NP_032459.3 Accepted alive Link to Nucleotide Sequence:NM_008433.5Link to Protein Sequence:NP_032459.3Re-query CCDS DB by Nucleotide ID:NM_008433Re-query CCDS DB by Protein ID:NP_032459Link to BLAST:NP_032459.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156982.1 425 O89109 425 100% 0 0
NP_032459.3 425 O89109 425 100% 0 0

Chromosomal Locations for CCDS 20948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24370437 24370595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24374672 24374767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24377283 24377704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24379134 24379269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24381652 24381762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24382162 24382280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24382472 24382541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24384009 24384173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGGCGGGGAGCTGGTGACTGGCCTGGGGGCCCTGAGACGGAGAAAGCGCCTGCTGGAGCAGGAGAAGA
GGGTGGCCGGCTGGGCGTTGGTGCTGGCGGGAACTGGCATCGGACTCATGGTTCTGCACGCTGAGATGTT
GTGGTTCCTGGGCTGCAAGTGGGTGCTGTACCTGCTCCTGGTTAAGTGTTTGATCACCCTGTCCACTGCC
TTCCTCCTTTGTCTTATTGTGGTCTTCCATGCCAAGGAGGTCCAGCTGTTCATGACTGACAACGGGCTCC
GGGACTGGCGCGTGGCGCTGACCCGGCGGCAGGTGGCGCAGATCCTGCTGGAGCTGTTGGTGTGCGGGGT
GCACCCGGTGCCCCTACGGAGCCCGCACTGCGCCCTGGCGGGGGAGGCCACCGACGCGCAGCCCTGGCCG
GGTTTCCTGGGCGAAGGCGAGGCGTTGCTGTCCCTGGCCATGCTCCTGCGTCTCTACCTGGTGCCCCGCG
CGGTGCTGCTGCGCAGCGGGGTCCTGCTCAACGCGTCCTACCGCAGCATCGGGGCGCTCAACCAAGTCCG
CTTCCGCCACTGGTTCGTGGCCAAGCTGTACATGAACACGCACCCGGGTCGCCTGCTGCTGGGCCTCACG
CTGGGTCTCTGGCTCACCACAGCTTGGGTGCTGTCTGTGGCTGAGAGGCAGGCTGTCAATGCCACGGGGC
ACCTCACAGACACACTGTGGCTGATTCCGATCACATTCCTGACCATTGGCTATGGGGACGTGGTACCTGG
CACCATGTGGGGCAAGATTGTCTGCCTGTGCACCGGAGTCATGGGGGTCTGCTGCACAGCTCTCCTGGTG
GCTGTGGTGGCTCGGAAGCTGGAGTTCAACAAGGCGGAGAAACACGTGCACAACTTCATGATGGACATCC
ATTATGCCAAAGAGATGAAGGAGTCAGCGGCGCGGCTGCTGCAGGAAGCCTGGATGTACTACAAGCACAC
TCGAAGGAAGGACTCCCGGGCTGCCCGCAGACATCAGCGCAAGATGCTGGCCGCCATCCACACGTTCCGC
CAGGTACGGCTGAAACACCGGAAGCTCCGGGAACAAGTGAATTCCATGGTGGACATCTCCAAGATGCACA
TGATCCTGTGCGACCTGCAGCTGGGTCTCAGCTCCTCGCACCGTGCCCTGGAGAAGAGAATCGACGGTCT
GGCAGGAAAGCTGGATGCCCTGACAGAGCTGCTCGGCACTGCTCTGCAGCAACAGCAGCTACCAGAACCC
AGTCAGGAGGCCACATAG

Translation (425 aa):
MGGELVTGLGALRRRKRLLEQEKRVAGWALVLAGTGIGLMVLHAEMLWFLGCKWVLYLLLVKCLITLSTA
FLLCLIVVFHAKEVQLFMTDNGLRDWRVALTRRQVAQILLELLVCGVHPVPLRSPHCALAGEATDAQPWP
GFLGEGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQVRFRHWFVAKLYMNTHPGRLLLGLT
LGLWLTTAWVLSVAERQAVNATGHLTDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLV
AVVARKLEFNKAEKHVHNFMMDIHYAKEMKESAARLLQEAWMYYKHTRRKDSRAARRHQRKMLAAIHTFR
QVRLKHRKLREQVNSMVDISKMHMILCDLQLGLSSSHRALEKRIDGLAGKLDALTELLGTALQQQQLPEP
SQEAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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