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Report for CCDS24233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24233.1 Public Mus musculus 10 Kif5a 23 108 98 CCDS HistoryNCBI Gene:16572Re-query CCDS DB by CCDS ID:24233.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099172.4 ENSMUSP00000096775.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099172.4Link to Ensembl Protein Viewer:ENSMUSP00000096775.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099172Re-query CCDS DB by Protein ID:ENSMUSP00000096775
Original member Current member EBI ENSMUST00000217895.1 ENSMUSP00000151402.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217895.1Link to Ensembl Protein Viewer:ENSMUSP00000151402.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217895Re-query CCDS DB by Protein ID:ENSMUSP00000151402
Original member Current member NCBI NM_001039000.4 NP_001034089.1 Accepted alive Link to Nucleotide Sequence:NM_001039000.4Link to Protein Sequence:NP_001034089.1Re-query CCDS DB by Nucleotide ID:NM_001039000Re-query CCDS DB by Protein ID:NP_001034089Link to BLAST:NP_001034089.1
Original member Current member NCBI NM_008447.4 NP_032473.2 Accepted alive Link to Nucleotide Sequence:NM_008447.4Link to Protein Sequence:NP_032473.2Re-query CCDS DB by Nucleotide ID:NM_008447Re-query CCDS DB by Protein ID:NP_032473Link to BLAST:NP_032473.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034089.1 1027 P33175 1027 100% 0 0
NP_032473.2 1027 P33175 1027 100% 0 0

Chromosomal Locations for CCDS 24233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127229778 127229856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127230149 127230176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127230569 127230636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127230924 127231077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127231292 127231508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127233817 127233921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127234047 127234118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127235617 127235677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127236054 127236155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127236721 127236830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127236932 127236996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127237297 127237414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127237717 127237905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127238745 127238891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127239174 127239380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127239829 127239897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127241931 127242106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127242658 127242806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127243360 127243508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127243648 127243752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127245350 127245474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127245705 127245792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127245947 127246002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127247032 127247080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127247523 127247627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127248030 127248103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127248192 127248279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127262768 127262896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3084 nt):
ATGGCGGAGACTAACAACGAATGCAGCATCAAGGTGCTTTGCCGATTTCGGCCCCTGAACCAGGCCGAGA
TTCTGCGGGGGGACAAGTTCATCCCCATTTTCCAAGGGGACGACAGCGTCATTATTGGGGGAAAGCCATA
TGTCTTTGACCGCGTCTTCCCCCCAAACACCACTCAGGAGCAGGTTTACCACGCCTGTGCCATGCAGATC
GTCAAAGACGTCCTTGCTGGTTACAATGGCACAATCTTCGCTTATGGACAGACATCCTCAGGGAAAACGC
ATACCATGGAGGGGAAGCTGCACGACCCTCAGCTGATGGGCATCATTCCCCGGATCGCTCGAGACATCTT
CAACCACATCTACTCCATGGATGAGAACCTTGAATTCCACATTAAGGTATCTTACTTCGAGATTTACCTG
GATAAGATCCGTGACCTTTTGGATGTGACCAAGACGAACCTGTCCGTGCATGAGGACAAAAACCGGGTGC
CGTTTGTCAAGGGTTGTACCGAACGCTTTGTGTCCAGCCCAGAGGAGATTCTGGATGTGATCGATGAGGG
GAAGTCCAACCGTCACGTAGCTGTCACCAACATGAACGAGCACAGTTCTCGGAGCCACAGCATCTTCCTC
ATCAACATCAAGCAGGAGAACGTAGAGACCGAGCAGAAGCTCAGCGGGAAGCTGTACCTCGTGGATCTGG
CCGGAAGCGAGAAGGTCAGCAAGACAGGGGCAGAGGGAGCCGTTCTGGACGAGGCAAAGAATATCAACAA
GTCGCTGTCGGCCCTGGGGAACGTGATCTCTGCACTGGCAGAGGGCACCAAAAGCTACGTGCCGTACCGC
GACAGCAAAATGACGAGGATTCTCCAGGACTCTCTGGGAGGGAACTGCAGGACTACCATGTTCATCTGCT
GCTCGCCGTCCAGCTACAATGACGCAGAGACCAAGTCCACGCTCATGTTTGGACAGCGGGCGAAGACCAT
CAAGAACACTGCCTCAGTGAATCTGGAGCTGACTGCTGAGCAGTGGAAGAAGAAGTATGAGAAGGAGAAG
GAGAAGACCAAGGCCCAGAAGGAGACAATTGCGAAGCTAGAGGCTGAGCTTAGCCGGTGGCGCAATGGAG
AGAATGTGCCTGAGACTGAGCGCCTGGCTGGAGAGGACTCAGCTCTGGGAGCTGAGCTCTGCGAGGAGAC
CCCTGTGAATGACAACTCATCCATTGTGGTACGCATCGCACCTGAGGAAAGGCAGAAATATGAGGAAGAG
ATCCGCCGTCTCTACAAGCAGCTTGATGACAAGGATGATGAGATCAACCAGCAGAGCCAGCTCATTGAGA
AGCTGAAGCAGCAGATGCTGGACCAGGAAGAGCTGCTCGTGTCCACTCGGGGAGACAACGAGAAGGTCCA
GCGGGAGCTTAGCCACCTGCAGTCCGAGAACGATGCTGCGAAGGACGAGGTGAAGGAAGTGCTGCAGGCC
CTAGAGGAGCTGGCGGTCAACTACGACCAGAAGTCCCAGGAGGTGGAGGAGAAGAGCCAGCAGAACCAGC
TGCTGGTGGACGAGCTGTCCCAGAAAGTGGCCACCATGCTGTCCCTGGAGTCCGAGCTACAGCGGCTCCA
GGAGGTCAGTGGACACCAGCGAAAGCGGATCGCTGAGGTGCTGAATGGGCTGATGAGGGACCTGAGTGAG
TTCAGTGTCATCGTGGGCAACGGCGAGATTAAGCTGCCCGTGGAGATCAGTGGGGCCATCGAGGAGGAGT
TCACGGTGGCCCGGCTCTACATCAGCAAGATCAAGTCGGAGGTGAAGTCCGTGGTTAAGCGATGTCGGCA
GCTGGAGAACCTCCAGGTGGAGTGTCATCGCAAGATGGAGGTGACCGGTAGGGAGCTGTCATCTTGCCAA
CTGCTCATCTCACAGCATGAGGCCAAGATCCGTTCACTCACGGAGTACATGCAGACTGTGGAGTTGAAGA
AACGGCACCTGGAAGAGTCCTACGACTCCCTGAGCGATGAGCTTGCCAGGCTCCAGGCGCACGAAACTGT
ACACGAGGTAGCTCTGAAAGACAAGGAGCCAGACACACAGGACGCGGAGGAGGTGAAGAAGGCCCTGGAA
CTACAGATGGAGAATCACCGTGAGGCCCATCACCGGCAGCTGGCCCGCCTCCGGGATGAGATTAATGAGA
AACAGAAAACCATTGATGAGCTGAAAGACCTGAACCAGAAGCTCCAGTTAGAGCTGGAGAAGCTTCAGGC
CGACTATGAGAGGCTGAAGAATGAAGAGAACGAGAAGAGCGCCAAGCTCCAGGAGCTGACATTTCTGTAT
GAGCGACATGAGCAGTCCAAGCAGGACCTCAAGGGGCTGGAGGAGACAGTTGCCCGTGAACTCCAGACCC
TCCACAACCTTCGCAAGCTGTTCGTTCAAGACGTCACGACTCGAGTCAAGAAAAGTGCAGAAATGGAGCC
CGAGGACAGTGGGGGGATTCATTCCCAAAAGCAGAAGATCTCCTTTCTTGAGAACAACCTGGAACAGCTT
ACAAAGGTTCACAAACAGCTGGTACGTGACAATGCAGATCTGCGTTGTGAGCTTCCTAAATTGGAAAAAC
GACTTCGGGCTACGGCTGAGAGAGTTAAGGCCCTGGAGGGTGCACTGAAGGAGGCCAAGGAGGGCGCTAT
GAAGGACAAGCGTAGATACCAGCAGGAGGTGGACCGCATCAAAGAAGCCGTGCGGTACAAGAGCTCCGGC
AAGCGGGGCCATTCTGCCCAGATCGCTAAGCCTGTGAGGCCTGGCCACTATCCTGCCTCCTCACCCACCA
ACCCCTACGGCACCCGGAGCCCCGAGTGTATCAGCTACACCAACAACCTCTTCCAGAACTACCAGAACCT
GCACCTGCAGGCTGCGCCTAGCTCCACTTCAGATATGTACTTTGCCAGCAGCGGAGCCACATCTGTTGCC
CCCTTGGCTTCCTACCAGAAGGCCAACATGGACAATGGAAATGCCACAGATATCAACGACAACAGGAGTG
ACCTGCCGTGTGGCTATGAGGCTGAGGACCAGGCCAAGCTTTTCCCTCTCCACCAAGAGACAGCAGCCAG
CTAA

Translation (1027 aa):
MAETNNECSIKVLCRFRPLNQAEILRGDKFIPIFQGDDSVIIGGKPYVFDRVFPPNTTQEQVYHACAMQI
VKDVLAGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIARDIFNHIYSMDENLEFHIKVSYFEIYL
DKIRDLLDVTKTNLSVHEDKNRVPFVKGCTERFVSSPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFL
INIKQENVETEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKSYVPYR
DSKMTRILQDSLGGNCRTTMFICCSPSSYNDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKEK
EKTKAQKETIAKLEAELSRWRNGENVPETERLAGEDSALGAELCEETPVNDNSSIVVRIAPEERQKYEEE
IRRLYKQLDDKDDEINQQSQLIEKLKQQMLDQEELLVSTRGDNEKVQRELSHLQSENDAAKDEVKEVLQA
LEELAVNYDQKSQEVEEKSQQNQLLVDELSQKVATMLSLESELQRLQEVSGHQRKRIAEVLNGLMRDLSE
FSVIVGNGEIKLPVEISGAIEEEFTVARLYISKIKSEVKSVVKRCRQLENLQVECHRKMEVTGRELSSCQ
LLISQHEAKIRSLTEYMQTVELKKRHLEESYDSLSDELARLQAHETVHEVALKDKEPDTQDAEEVKKALE
LQMENHREAHHRQLARLRDEINEKQKTIDELKDLNQKLQLELEKLQADYERLKNEENEKSAKLQELTFLY
ERHEQSKQDLKGLEETVARELQTLHNLRKLFVQDVTTRVKKSAEMEPEDSGGIHSQKQKISFLENNLEQL
TKVHKQLVRDNADLRCELPKLEKRLRATAERVKALEGALKEAKEGAMKDKRRYQQEVDRIKEAVRYKSSG
KRGHSAQIAKPVRPGHYPASSPTNPYGTRSPECISYTNNLFQNYQNLHLQAAPSSTSDMYFASSGATSVA
PLASYQKANMDNGNATDINDNRSDLPCGYEAEDQAKLFPLHQETAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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