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Report for CCDS29261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29261.1 Public Mus musculus 18 Lmnb1 23 108 98 CCDS HistoryNCBI Gene:16906Re-query CCDS DB by CCDS ID:29261.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025486.8 ENSMUSP00000025486.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025486.8Link to Ensembl Protein Viewer:ENSMUSP00000025486.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025486Re-query CCDS DB by Protein ID:ENSMUSP00000025486
Original member Current member NCBI NM_010721.2 NP_034851.2 Accepted alive Link to Nucleotide Sequence:NM_010721.2Link to Protein Sequence:NP_034851.2Re-query CCDS DB by Nucleotide ID:NM_010721Re-query CCDS DB by Protein ID:NP_034851Link to BLAST:NP_034851.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034851.2 588 P14733 588 100% 0 0

Chromosomal Locations for CCDS 29261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56708113 56708474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56728401 56728557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56729287 56729412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56730970 56731140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56733212 56733337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56739821 56740041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56740687 56740912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56743211 56743315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56747977 56748096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56749699 56749809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56752607 56752648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCGACCGCGACCCCCGTGCAGCAGCAGCGGGCGGGCAGCCGCGCCAGCGCCCCCGCCACGCCGCTCA
GCCCCACGCGCCTGTCGCGCCTGCAGGAGAAAGAGGAGCTGCGGGAGCTCAACGACCGCCTGGCTGTGTA
CATCGATAAGGTGCGCAGCCTGGAGACGGAGAACAGCGCGCTGCAGCTGCAGGTGACCGAGCGCGAGGAG
GTGCGCGGCCGCGAGCTCACCGGCCTCAAGGCTCTCTACGAGACCGAGCTGGCCGACGCACGCCGCGCTC
TGGACGACACGGCCCGCGAGCGCGCCAAGCTCCAGATCGAGCTGGGCAAGTTCAAGGCCGAGCACGACCA
GCTGCTGCTCAATTATGCCAAGAAGGAATCTGATCTCAGTGGAGCCCAGATCAAGCTTCGAGAGTATGAG
GCGGCACTAAACTCTAAGGATGCGGCGCTGGCTACTGCCCTAGGGGACAAAAAGAGTTTAGAGGGAGACT
TGGAGGATCTGAAAGATCAGATTGCCCAGCTAGAAGCATCCTTATCTGCCGCCAAAAAGCAGTTAGCAGA
TGAAACTTTACTTAAAGTGGATTTGGAGAATCGCTGTCAGAGCCTTACTGAGGACTTGGAGTTTCGTAAA
AATATGTATGAAGAGGAGATCAATGAGACAAGGAGGAAGCATGAGACCCGCTTGGTGGAAGTGGACTCTG
GGCGTCAGATTGAGTATGAGTACAAGCTGGCTCAAGCCCTGCATGAGATGCGGGAGCAGCACGACGCGCA
GGTGAGGCTGTACAAGGAAGAGCTGGAGCAGACCTACCACGCCAAGCTTGAGAATGCCAGACTCTCCTCA
GAGATGAACACTTCCACTGTCAACAGTGCCCGGGAAGAGCTGATGGAGAGCCGGATGAGGATCGAGAGCC
TCTCCTCACAGCTCTCTAACCTGCAGAAAGAGTCTAGAGCGTGTTTGGAAAGGATCCAGGAATTGGAGGA
CATGCTTGCTAAGGAGAGAGACAACTCGCGCCGCATGCTGTCTGACAGAGAGAGAGAGATGGCGGAGATC
AGGGACCAGATGCAGCAGCAGCTGAGTGATTATGAGCAGCTGCTGGACGTGAAGCTGGCCCTGGACATGG
AGATCAGCGCCTACAGGAAGCTCCTGGAAGGCGAAGAAGAGCGGTTAAAGCTCTCTCCAAGCCCTTCTTC
CCGGGTGACCGTGTCCAGAGCGTCCTCCAGTCGCAGTGTGCGCACCACCAGAGGAAAGCGGAAGAGAGTT
GATGTGGAGGAGTCGGAGGCGAGCAGCAGTGTTAGCATTTCCCACTCTGCCTCAGCCACGGGGAACGTGT
GCATTGAAGAGATAGATGTTGATGGGAAGTTTATTCGCTTGAAGAACACTTCTGAGCAGGATCAACCAAT
GGGAGGCTGGGAGATGATCAGAAAAATTGGAGACACATCAGTCAGTTACAAATATACCTCAAGATATGTG
CTGAAGGCTGGCCAGACTGTCACAGTGTGGGCTGCAAATGCTGGCGTCACAGCCAGCCCTCCAACTGACC
TCATCTGGAAGAACCAGAACTCTTGGGGTACTGGTGAAGATGTGAAGGTTATATTGAAGAATTCTCAGGG
AGAGGAGGTTGCTCAGAGAAGCACAGTCTTCAAGACCACCATACCCGAGGAGGAGGAGGAGGAGGAGGAG
GAGCCCATCGGAGTGGCTGTGGAGGAGGAGCGTTTCCACCAGCAGGGAGCCCCAAGAGCATCCAATAAAA
GCTGTGCCATTATGTGA

Translation (588 aa):
MATATPVQQQRAGSRASAPATPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTEREE
VRGRELTGLKALYETELADARRALDDTARERAKLQIELGKFKAEHDQLLLNYAKKESDLSGAQIKLREYE
AALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLSAAKKQLADETLLKVDLENRCQSLTEDLEFRK
NMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLYKEELEQTYHAKLENARLSS
EMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELEDMLAKERDNSRRMLSDREREMAEI
RDQMQQQLSDYEQLLDVKLALDMEISAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRTTRGKRKRV
DVEESEASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYV
LKAGQTVTVWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFKTTIPEEEEEEEE
EPIGVAVEEERFHQQGAPRASNKSCAIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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