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Report for CCDS40357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40357.1 Public Mus musculus 8 Lpl 23 108 98 CCDS HistoryNCBI Gene:16956Re-query CCDS DB by CCDS ID:40357.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015712.14 ENSMUSP00000015712.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015712.14Link to Ensembl Protein Viewer:ENSMUSP00000015712.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000015712Re-query CCDS DB by Protein ID:ENSMUSP00000015712
Original member Current member EBI ENSMUST00000168401.1 ENSMUSP00000132259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168401.1Link to Ensembl Protein Viewer:ENSMUSP00000132259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168401Re-query CCDS DB by Protein ID:ENSMUSP00000132259
Original member Current member NCBI NM_008509.2 NP_032535.2 Accepted alive Link to Nucleotide Sequence:NM_008509.2Link to Protein Sequence:NP_032535.2Re-query CCDS DB by Nucleotide ID:NM_008509Re-query CCDS DB by Protein ID:NP_032535Link to BLAST:NP_032535.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032535.2 474 P11152 474 100% 0 0

Chromosomal Locations for CCDS 40357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 68880753 68880840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68887443 68887603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68892595 68892774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68894627 68894738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68895662 68895895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68896599 68896841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68899417 68899537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68901148 68901330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68902284 68902385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68904506 68904506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGAGAGCAAAGCCCTGCTCCTGGTGGTCCTGGGAGTTTGGCTCCAGAGTTTGACCGCCTTCCGAGGAG
GGGTGGCCGCAGCAGACGCGGGAAGAGATTTCTCAGACATCGAAAGCAAATTTGCCCTAAGGACCCCTGA
AGACACAGCTGAGGACACTTGTCATCTCATTCCTGGATTAGCAGACTCTGTGTCTAACTGCCACTTCAAC
CACAGCAGCAAGACCTTCGTGGTGATCCATGGATGGACGGTAACGGGAATGTATGAGAGTTGGGTGCCCA
AACTTGTGGCCGCCCTGTACAAGAGAGAACCTGACTCCAATGTCATTGTAGTAGACTGGTTGTATCGGGC
CCAGCAACATTATCCAGTGTCAGCTGGCTACACCAAGCTGGTGGGAAATGATGTGGCCAGATTCATCAAC
TGGATGGAGGAGGAGTTTAACTACCCCCTAGACAACGTCCACCTCTTAGGGTACAGCCTTGGAGCCCATG
CTGCTGGCGTAGCAGGAAGTCTGACCAATAAGAAGGTCAATAGAATTACTGGTTTGGATCCAGCTGGGCC
TAACTTTGAGTATGCAGAAGCCCCCAGTCGCCTTTCTCCTGATGACGCTGATTTTGTAGATGTCTTACAC
ACATTTACCAGGGGGTCACCTGGTCGAAGTATTGGAATCCAGAAACCAGTAGGGCATGTTGACATTTATC
CCAATGGAGGCACTTTCCAGCCAGGATGCAACATTGGAGAAGCCATCCGTGTGATTGCAGAGAGAGGACT
CGGAGACGTGGACCAGCTGGTGAAGTGCTCGCACGAGCGCTCCATTCATCTCTTCATTGACTCCCTGCTG
AATGAAGAAAACCCCAGCAAGGCATACAGGTGCAACTCCAAGGAAGCCTTTGAGAAAGGGCTCTGCCTGA
GTTGTAGAAAGAATCGCTGTAACAATCTGGGCTATGAGATCAACAAGGTCAGAGCCAAGAGAAGCAGCAA
GATGTACCTGAAGACTCGCTCTCAGATGCCCTACAAAGTGTTCCATTACCAAGTCAAGATTCACTTTTCT
GGGACTGAGGATGGCAAGCAACACAACCAGGCCTTCGAGATTTCTCTGTACGGCACAGTGGCCGAGAGCG
AGAACATTCCCTTCACCCTGCCCGAGGTTTCCACAAATAAAACCTACTCCTTCTTGATTTACACGGAGGT
GGACATCGGAGAACTGCTCATGATGAAGCTTAAGTGGATAAGCGACTCCTACTTCAGCTGGCCTGACTGG
TGGAGCAGCCCCAGCTTCGTCATCGAGAGGATCCGAGTGAAAGCCGGAGAGACTCAGAAAAAGGTCATCT
TCTGTGCTAGGGAGAAAGTTTCTCATCTGCAGAAGGGAAAGGACTCAGCAGTGTTTGTGAAATGCCATGA
CAAGTCTCTGAAGAAGTCTGGCTGA

Translation (474 aa):
MESKALLLVVLGVWLQSLTAFRGGVAAADAGRDFSDIESKFALRTPEDTAEDTCHLIPGLADSVSNCHFN
HSSKTFVVIHGWTVTGMYESWVPKLVAALYKREPDSNVIVVDWLYRAQQHYPVSAGYTKLVGNDVARFIN
WMEEEFNYPLDNVHLLGYSLGAHAAGVAGSLTNKKVNRITGLDPAGPNFEYAEAPSRLSPDDADFVDVLH
TFTRGSPGRSIGIQKPVGHVDIYPNGGTFQPGCNIGEAIRVIAERGLGDVDQLVKCSHERSIHLFIDSLL
NEENPSKAYRCNSKEAFEKGLCLSCRKNRCNNLGYEINKVRAKRSSKMYLKTRSQMPYKVFHYQVKIHFS
GTEDGKQHNQAFEISLYGTVAESENIPFTLPEVSTNKTYSFLIYTEVDIGELLMMKLKWISDSYFSWPDW
WSSPSFVIERIRVKAGETQKKVIFCAREKVSHLQKGKDSAVFVKCHDKSLKKSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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