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Report for CCDS23948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23948.1 Public Mus musculus 10 Lss 23 108 98 CCDS HistoryNCBI Gene:16987Re-query CCDS DB by CCDS ID:23948.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048678.6 ENSMUSP00000046856.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048678.6Link to Ensembl Protein Viewer:ENSMUSP00000046856.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048678Re-query CCDS DB by Protein ID:ENSMUSP00000046856
Original member Current member NCBI NM_146006.2 NP_666118.1 Accepted alive Link to Nucleotide Sequence:NM_146006.2Link to Protein Sequence:NP_666118.1Re-query CCDS DB by Nucleotide ID:NM_146006Re-query CCDS DB by Protein ID:NP_666118Link to BLAST:NP_666118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666118.1 733 Q8BLN5 733 100% 0 0

Chromosomal Locations for CCDS 23948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76531661 76531674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76531850 76532018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76533513 76533651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76535559 76535667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76536244 76536365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76538352 76538448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76539785 76539920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76540312 76540420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76540846 76540964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76541819 76541916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76542468 76542495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76543851 76543907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76544465 76544536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76545451 76545501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76546062 76546211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76546763 76546859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76547435 76547540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76549220 76549285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76549803 76549883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76550585 76550755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76552320 76552398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76552937 76553068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGACTGAGGGCACGTGTCTGCGGCGTCGTGGGGGACCCTATAAAACTGAGCCCGCCACCGATCTCACCC
GCTGGCGGCTCCAGAATGAGTTGGGTCGGCAGAGATGGACTTATTATCAAGCGGAGGACGACCCTGGTCG
AGAGCAGACCGGGCTAGAGGCCCACTCTTTGGGACTGGACACAAGAAGTTATTTCACGGACTTACCAAAA
GCGCAAACAGCCCATGAGGGGGCCCTGAATGGAGTAACCTTTTATGCCAAGCTGCAGGCTGAGGATGGAC
ACTGGGCTGGTGATTATGGTGGTCCGCTCTTCCTCTTGCCAGGTCTCCTGATTACCTGTCACATATCACA
CATCTCTCTGCCAGCTGGATACAGAGAGGAGATGGTGCGGTACCTGCGGTCAGTGCAGCTCCCTGATGGC
GGCTGGGGCTTGCACATCGAGGACAAGTCCACAGTGTTTGGGACTGCCCTGAACTATGTGGCTCTCAGAA
TCCTGGGTATTGGGCCTGATGATCCTGACCTTGTGCGCGCTCGGAACGTCCTTCACAAAAAAGGTGGTGC
GGTGGCCATCCCTTCCTGGGGGAAGTTCTGGCTGGCTGTCCTGAATGTTTATAGCTGGGAAGGACTCAAC
ACCCTATTCCCTGAGATGTGGCTGTTTCCTGAATGGGTACCAGCGCACCCCTCCACTCTCTGGTGTCACT
GCCGGCAGGTCTATCTGCCCATGAGTTACTGCTACGCCACTCGGCTAAGTGCCTCAGAGGACCCACTGGT
TCAGAGCCTCCGCCAGGAACTCTATGTGCAGGATTACGCCAGCATCGATTGGCCAGCGCAGAGGAACAAC
GTGTCCCCCGATGAGATGTACACGCCACACAGCTGGCTGCTGCATGTGGTGTATGGACTCCTCAACCTGT
ATGAACGTTTCCATAGCACCAGCCTGCGGAAGTGGGCCGTCCAGATGCTGTATGAACACATTGCAGCTGA
TGACTGTTTCACTAAGTGCATCAGCATCGGCCCGATCTCAAAGACCATCAACATGCTTGTTCGTTGGTCA
GTGGATGGACCATCCTCCCCGGCCTTCCAGGAGCACGTTTCTCGGATCAAAGATTACCTTTGGCTGGGCC
TTGATGGCATGAAAATGCAGGGCACCAATGGATCACAGATCTGGGACACTTCATTTGCTATCCAAGCACT
GTTAGAGGCAGGTGCACACCACAGACCTGAGTTTCTGCCCTGCCTGCAGAAGGCTCACGAGTTCCTGCGG
CTTTCACAGGTTCCAGAAAACTGTCCTGACTATCAGAAGTACTATCGCCATATGCGCAAGGGTGGTTTCT
CCTTCAGCACACTGGACTGTGGCTGGATCGTTGCTGACTGCACAGCCGAGGGTTTGAAGGCTGTGCTGCT
CCTGCAGAATCAGTGTCCGTCCATCACTGAGCATATCCCCCGAGAGCGGCTGTGCGATGCTGTGGATGTG
TTACTGAGCTTGAGGAATGCTGATGGCGGGTTCGCTACCTATGAGAAGAAGCGTGGGGGTTACTTGCTGG
AGCTGCTGAACCCCTCAGAGGTCTTTGGAGACATCATGATTGACTACACGTATGTAGAGTGTACCTCCGC
TGTGATGCAGGCACTGAAGCATTTCCATGAACACTTCCCAGACTACAGGGCAGCAGAGGTCAGGGAGACC
CTCAATCAAGGCCTGGACTTCTGCCGAAGGAAGCAGAGAGCCGATGGCTCCTGGGAGGGCTCCTGGGGTG
TTTGTTTCACCTACGGCACCTGGTTTGGCTTGGAAGCGTTCGCTTGCATGGGGCATACCTACCAAGATGG
GGCTGCTTGTGCAGAAGTAGCTCAGGCCTGCAACTTCCTCCTGTCCCAGCAGATGGCGGATGGAGGCTGG
GGAGAGGACTTTGAATCATGTGAACAGCGGCGGTATGTGCAGAGTGCTAGGTCCCAGGTCCATAGCACCT
GCTGGGCCCTGATGGGTTTGATGGCTGTCAGGCATCCCGACATCACTGCTCAGGAGAGAGGGATCAGATG
TCTGCTAGGGAAGCAGTTACCCAATGGAGACTGGCCTCAGGAGAACATCTCTGGGGTCTTCAACAAGTCC
TGTGCCATCAGCTACACAAGTTACAGAAACATCTTCCCCATCTGGGCCCTGGGCCGCTTCTCCAACCTGT
ATCCTGACAATACCCTCGCCGGCCACATTTGA

Translation (733 aa):
MTEGTCLRRRGGPYKTEPATDLTRWRLQNELGRQRWTYYQAEDDPGREQTGLEAHSLGLDTRSYFTDLPK
AQTAHEGALNGVTFYAKLQAEDGHWAGDYGGPLFLLPGLLITCHISHISLPAGYREEMVRYLRSVQLPDG
GWGLHIEDKSTVFGTALNYVALRILGIGPDDPDLVRARNVLHKKGGAVAIPSWGKFWLAVLNVYSWEGLN
TLFPEMWLFPEWVPAHPSTLWCHCRQVYLPMSYCYATRLSASEDPLVQSLRQELYVQDYASIDWPAQRNN
VSPDEMYTPHSWLLHVVYGLLNLYERFHSTSLRKWAVQMLYEHIAADDCFTKCISIGPISKTINMLVRWS
VDGPSSPAFQEHVSRIKDYLWLGLDGMKMQGTNGSQIWDTSFAIQALLEAGAHHRPEFLPCLQKAHEFLR
LSQVPENCPDYQKYYRHMRKGGFSFSTLDCGWIVADCTAEGLKAVLLLQNQCPSITEHIPRERLCDAVDV
LLSLRNADGGFATYEKKRGGYLLELLNPSEVFGDIMIDYTYVECTSAVMQALKHFHEHFPDYRAAEVRET
LNQGLDFCRRKQRADGSWEGSWGVCFTYGTWFGLEAFACMGHTYQDGAACAEVAQACNFLLSQQMADGGW
GEDFESCEQRRYVQSARSQVHSTCWALMGLMAVRHPDITAQERGIRCLLGKQLPNGDWPQENISGVFNKS
CAISYTSYRNIFPIWALGRFSNLYPDNTLAGHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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