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Report for CCDS26543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26543.1 Public Mus musculus 13 Mxd3 23 108 98 CCDS HistoryNCBI Gene:17121Re-query CCDS DB by CCDS ID:26543.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021941.7 ENSMUSP00000021941.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021941.7Link to Ensembl Protein Viewer:ENSMUSP00000021941.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021941Re-query CCDS DB by Protein ID:ENSMUSP00000021941
Original member Current member NCBI NM_016662.5 NP_057871.2 Accepted alive Link to Nucleotide Sequence:NM_016662.5Link to Protein Sequence:NP_057871.2Re-query CCDS DB by Nucleotide ID:NM_016662Re-query CCDS DB by Protein ID:NP_057871Link to BLAST:NP_057871.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057871.2 206 Q80US8 206 100% 0 0

Chromosomal Locations for CCDS 26543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55325783 55325898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55326013 55326196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55328370 55328484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55328614 55328643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55329269 55329374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55329598 55329667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGAACCCGTGGCTAGCAACATCCAGGTCCTGCTGCAGGCAGCGGAGTTCCTGGAGAGGCGCGAGAGAG
AGGCAGAGCACGGTTATGCGTCCCTGTGTCCACACCACAGCCCCGGGACCGTCTGCAGGAGGAGGAAGCC
ACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCACAACGAGCTGGAGAAGCGCAGGAGA
GCCCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGGAGTTGACTGTACCCGATACA
CTACACTAAGCCTCCTGCGCCGGGCCAGGGTGCATATCCAGAAGCTGGAGGAGCAGGAGCAGCAAGCCCG
GCGGCTCAAGGAAAAGCTTCGCAGCAAACAGCAGAGCCTGCAGCAGCAGCTGGAGCAGCTCCAGGGGCTG
CCAGGAGCTAGGGAGCGAGAGCGGCTGAGGGCAGACAGCTTGGACTCTTCAGGCCTGTCCTCTGAGCGCT
CAGACTCAGACCAAGAGGATCTGGAGGTGGATGTGGAGAGCCTGGTGTTTGGGACTGAAACAGAGCTCCT
ACAGAGCTTCAGCGCTGGGCGGGAGCACAGCTACTCACACAGCACCTGCGCCTGGCTATGA

Translation (206 aa):
MEPVASNIQVLLQAAEFLERREREAEHGYASLCPHHSPGTVCRRRKPPLQAPGALNSGRSVHNELEKRRR
AQLKRCLEQLRQQMPLGVDCTRYTTLSLLRRARVHIQKLEEQEQQARRLKEKLRSKQQSLQQQLEQLQGL
PGARERERLRADSLDSSGLSSERSDSDQEDLEVDVESLVFGTETELLQSFSAGREHSYSHSTCAWL


Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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