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Report for CCDS26318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26318.1 Public Mus musculus 13 Vmn1r200 23 108 98 CCDS HistoryNCBI Gene:171246Re-query CCDS DB by CCDS ID:26318.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074324.4 ENSMUSP00000073934.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074324.4Link to Ensembl Protein Viewer:ENSMUSP00000073934.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074324Re-query CCDS DB by Protein ID:ENSMUSP00000073934
Original member Current member EBI ENSMUST00000228726.1 ENSMUSP00000154179.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228726.1Link to Ensembl Protein Viewer:ENSMUSP00000154179.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228726Re-query CCDS DB by Protein ID:ENSMUSP00000154179
Original member Current member EBI ENSMUST00000226157.1 ENSMUSP00000154259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226157.1Link to Ensembl Protein Viewer:ENSMUSP00000154259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226157Re-query CCDS DB by Protein ID:ENSMUSP00000154259
Original member Current member NCBI NM_134212.1 NP_598973.1 Accepted alive Link to Nucleotide Sequence:NM_134212.1Link to Protein Sequence:NP_598973.1Re-query CCDS DB by Nucleotide ID:NM_134212Re-query CCDS DB by Protein ID:NP_598973Link to BLAST:NP_598973.1

Chromosomal Locations for CCDS 26318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22395029 22395967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATTTTAAAGTACATTAAAGAAATTATTTTCCCCTCCATGACAGTGCTTGGCACTCTGGGAAACATGT
TTGTTTTTGTGAATTATATGTTCAGTTGGTGGGGAAGCCCTGAGAAGAAACCCATACACCTCATTCTCAT
CCACTTGGCTTTTACAAACATCATAATCCTTCTTACAAAAGGATTGCAAAAGACAATAGCAGCTTTTGGT
TTGAGAAACTTCCTGGATGACATAGGCTGTAAGAGCATTGTCTACCTGGAAAGGGTATCCCGTGGCCTCT
CCATCTGTACCAGCAGTCTCCTCACTGTGGTCCAGGCCATCACCATCAGTCCCAGAGCATCTGGATGGAG
GAGGCTCAGGACAAAGTCTGCATGGCACATCCTTCCATTCTTGCTATTCTTTTGGATACTCAATGGTTTA
ATAAGTATGAACCTAATCCATTCCATCACAGGTACAGGTTTTAATATATCACAGCTTGAGAATAGAGACA
GCTATTGCTATTTTATGCTAGAAAGTCAGGAAATAAAATGGATTGTTCTCCCTCTCATGGTCATGAGAGA
TGCAGTGTTTCAGAGTGCCCTGGGAGGGGCCAGTGGCTACATGATATTTCTTCTCCACAAGCACCACCAG
CATGTCCTCTACCTTCAGAATTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCCCAGAGTG
TCCTCCTTCTGATGCTCTGTTTTGCTTTCTTCTACTGGACAGATTGTGCGTTTTCTCTAATTTTAAGTCT
CTCTTCAAGGGACAAAACCTTGATGGTAAATACTCAAGAATTTCTGGCCCTTGGTTATGCAACTTTTAGC
CCTTTTGTGCTGATTCACAGGGATGGGCTTCTGGTTGATTGGTGGCATGCTCAGATGGAGAAATTGAGAA
AATGTTACTCTCGTTTATATGTGCAATAG

Translation (312 aa):
MILKYIKEIIFPSMTVLGTLGNMFVFVNYMFSWWGSPEKKPIHLILIHLAFTNIIILLTKGLQKTIAAFG
LRNFLDDIGCKSIVYLERVSRGLSICTSSLLTVVQAITISPRASGWRRLRTKSAWHILPFLLFFWILNGL
ISMNLIHSITGTGFNISQLENRDSYCYFMLESQEIKWIVLPLMVMRDAVFQSALGGASGYMIFLLHKHHQ
HVLYLQNSKLLYRTPPELRAAQSVLLLMLCFAFFYWTDCAFSLILSLSSRDKTLMVNTQEFLALGYATFS
PFVLIHRDGLLVDWWHAQMEKLRKCYSRLYVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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