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Report for CCDS22808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22808.1 Public Mus musculus 9 Mmp8 23 108 98 CCDS HistoryNCBI Gene:17394Re-query CCDS DB by CCDS ID:22808.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018765.3 ENSMUSP00000018765.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018765.3Link to Ensembl Protein Viewer:ENSMUSP00000018765.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018765Re-query CCDS DB by Protein ID:ENSMUSP00000018765
Original member Current member NCBI NM_008611.4 NP_032637.3 Accepted alive Link to Nucleotide Sequence:NM_008611.4Link to Protein Sequence:NP_032637.3Re-query CCDS DB by Nucleotide ID:NM_008611Re-query CCDS DB by Protein ID:NP_032637Link to BLAST:NP_032637.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032637.3 465 O70138 465 100% 0 0

Chromosomal Locations for CCDS 22808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 7558536 7558643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7560432 7560670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7561344 7561492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7561572 7561697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7563060 7563221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7564879 7564996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7565514 7565647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7566181 7566334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7567190 7567293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7567435 7567538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGTTTCGCCTGAAGACACTTCCATTACTGATCTTCCTCCACACACAGCTTGCCAATGCCTTCCCAGTAC
CTGAACACCTGGAAGAGAAAAATATAAAAACTGCTGAGAATTACCTACGAAAATTCTACAACTTACCAAG
CAATCAATTCCGGTCTTCGAGGAATGCCACGATGGTTGCAGAGAAGCTTAAAGAGATGCAGCGCTTCTTC
AGCTTAGCAGAGACTGGGAAGTTAGATGCAGCTACAATGGGGATTATGGAAATGCCTCGATGTGGAGTGC
CTGACTCTGGTGATTTCTTGCTAACCCCAGGAAGTCCCAAGTGGACACACACTAACCTGACCTACAGGAT
TATAAACCATACGCCACAGCTGTCAAGGGCTGAAGTGAAAACAGCAATTGAGAAAGCTTTTCACGTCTGG
AGTGTAGCATCGCCCCTGACCTTCACCGAGATCTTACAGGGAGAAGCAGACATCAACATTGCTTTCGTCT
CAAGAGACCATGGTGACAATTCTCCATTTGATGGACCCAATGGAATCCTTGCCCATGCCTTTCAACCAGG
CCAAGGTATTGGAGGAGATGCTCATTTTGATTCAGAAGAAACGTGGACTCAAGATTCCAAAAATTACAAC
CTATTTCTCGTGGCTGCTCATGAATTTGGACATTCTTTGGGACTCTCTCACTCCACTGATCCTGGTGCCT
TGATGTACCCAAACTATGCTTACAGGGAACCCAGCACCTATTCACTACCTCAAGATGATATCAATGGCAT
TCAGACAATCTATGGACCTTCAGACAACCCCATCCAACCTACTGGGCCCAGCACACCCAAAGCCTGTGAC
CCCCACCTGAGATTTGATGCTACTACCACACTCCGTGGGGAGATTTACTTCTTTAAAGACAAGTACTTCT
GGAGACGGCATCCTCAGCTGAGAACAGTTGACCTCAATTTCATATCTCTGTTCTGGCCCTTCCTACCCAA
CGGTCTTCAGGCTGCTTATGAAGATTTTGACAGAGACCTAGTTTTCCTATTTAAAGGCAGACAGTACTGG
GCTCTAAGTGGCTATGACCTGCAGCAAGGTTACCCCAGAGATATATCCAACTATGGATTCCCAAGGAGTG
TCCAAGCCATTGATGCAGCTGTTTCCTATAACGGGAAGACATACTTCTTCATAAACAACCAGTGCTGGAG
ATATGACAATCAAAGAAGATCCATGGACCCAGGTTACCCCAAAAGCATACCAAGCATGTTCCCAGGAGTA
AACTGTAGAGTCGATGCAGTTTTCCTGCAGGACTCCTTCTTCCTCTTCTTCAGTGGACCACAATATTTTG
CATTTAATTTTGTCAGTCACAGAGTCACTAGAGTTGCAAGAAGCAATTTATGGCTTAACTGTTCATAG

Translation (465 aa):
MFRLKTLPLLIFLHTQLANAFPVPEHLEEKNIKTAENYLRKFYNLPSNQFRSSRNATMVAEKLKEMQRFF
SLAETGKLDAATMGIMEMPRCGVPDSGDFLLTPGSPKWTHTNLTYRIINHTPQLSRAEVKTAIEKAFHVW
SVASPLTFTEILQGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETWTQDSKNYN
LFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPIQPTGPSTPKACD
PHLRFDATTTLRGEIYFFKDKYFWRRHPQLRTVDLNFISLFWPFLPNGLQAAYEDFDRDLVFLFKGRQYW
ALSGYDLQQGYPRDISNYGFPRSVQAIDAAVSYNGKTYFFINNQCWRYDNQRRSMDPGYPKSIPSMFPGV
NCRVDAVFLQDSFFLFFSGPQYFAFNFVSHRVTRVARSNLWLNCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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