NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51537.1 Public Mus musculus 5 Prol1 23 108 98 CCDS HistoryNCBI Gene:17830Re-query CCDS DB by CCDS ID:51537.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170832.2 ENSMUSP00000132678.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170832.2Link to Ensembl Protein Viewer:ENSMUSP00000132678.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170832Re-query CCDS DB by Protein ID:ENSMUSP00000132678
Original member Current member NCBI NM_008644.2 NP_032670.2 Accepted alive Link to Nucleotide Sequence:NM_008644.2Link to Protein Sequence:NP_032670.2Re-query CCDS DB by Nucleotide ID:NM_008644Re-query CCDS DB by Protein ID:NP_032670Link to BLAST:NP_032670.2

Chromosomal Locations for CCDS 51537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88318560 88318613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88327807 88328691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAAAAATGAAATGTTCATCTTGGGCCTGTTGGCTCTTACTTCATATTTCATGCCTGGTGAAAGTCATC
ACAAGTCAAGAAGTTCACAATTCCCTGTCAGAAAATATCTAGAAGACCCAAGATATCCAAGATATCCAAG
ACCACATTATTCCTATGGTTTCATTCCAAGCTCTCCAAAGTTTCCAAAAGACAATCAATGGTATAAGATG
TGCCCTCCAGGAACTACCTTAATGCTGATCAGTCGCCGTTCTCCTAAATTTCTATGCATTCCTAAAAGAC
AGATTATCTCTGATAAAACGAAACCAAATGCAACCACACCAGCACCTACCACCAAACCTACCACAAATGC
AACTACACCAGCACCAACCAACAGAACTACCACAAATGCAATCACACCAGCACCGACCCCCAAACCTACC
ACAAATGCAACCACACCAGCACCAACCAACAGAACTACCACAAATGCAACCACACCAGCACCGACCCTCA
AACCTACCACAAATGCAACCATACCAGCACCAAACAACAGAACTACCACAAATGCAACCACACCAGCACC
GACCACAAAACCTACCACAAATACAACCACACCAGCACCGACCACCAAATCTACCACAAATGTAACCACA
CCAGCAACAACCACAAATGTAACCACACCAGCAACAACCACAAATGCAACCACACCAGCAACAACCACAA
ATGCAACCACACCAGCAACAACCACAAATGCAACCACACCAGCAACAACCACCAAATCTACAACAAAAGA
ACCTACTACTTCACCTAAGCCTAGCACCTCTACAGCCATACCTACAACAACTAAGTCTGCAAATAGTACT
TCCTCTACTACAACTAGTACTACCATCCAAACTACAGCTCCAACATTTGCGGAAGTGTTTTGGAAGTTCT
TTCAGCAGATCTTTAGGTTAAAGAAATGA

Translation (312 aa):
MKNEMFILGLLALTSYFMPGESHHKSRSSQFPVRKYLEDPRYPRYPRPHYSYGFIPSSPKFPKDNQWYKM
CPPGTTLMLISRRSPKFLCIPKRQIISDKTKPNATTPAPTTKPTTNATTPAPTNRTTTNAITPAPTPKPT
TNATTPAPTNRTTTNATTPAPTLKPTTNATIPAPNNRTTTNATTPAPTTKPTTNTTTPAPTTKSTTNVTT
PATTTNVTTPATTTNATTPATTTNATTPATTTNATTPATTTKSTTKEPTTSPKPSTSTAIPTTTKSANST
SSTTTSTTIQTTAPTFAEVFWKFFQQIFRLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH