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Report for CCDS18232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18232.1 Public Mus musculus 4 Mup5 23 108 98 CCDS HistoryNCBI Gene:17844Re-query CCDS DB by CCDS ID:18232.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082287.2 ENSMUSP00000080908.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082287.2Link to Ensembl Protein Viewer:ENSMUSP00000080908.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000082287Re-query CCDS DB by Protein ID:ENSMUSP00000080908
Original member Current member NCBI NM_008649.2 NP_032675.2 Accepted alive Link to Nucleotide Sequence:NM_008649.2Link to Protein Sequence:NP_032675.2Re-query CCDS DB by Nucleotide ID:NM_008649Re-query CCDS DB by Protein ID:NP_032675Link to BLAST:NP_032675.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032675.2 180 P11591 180 100% 0 0

Chromosomal Locations for CCDS 18232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 61832362 61832387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61832552 61832653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61832995 61833105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61833707 61833780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61834555 61834688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 61835027 61835122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAAGCTGTTGCTGCTGCTGTGTTTGGAACTGACACTAGTCTATGTCCATGCAGAAGAAGCTAGTTCTG
AGGGACAGAACTTAAATGTAGAAAAGATTAATGGAAAATGGTTTTCTATTCTCCTGGCCTCTGACAAAAG
AGAAAAGATAGAAGAACATGGCACCATGAGAGTTTTTGTGGAGCACATCGATGTCTTGGAGAATTCCTTA
GCTTTTAAATTCCATACTGTTATAGATGAAGAGTGCACTGAAATATATTTGGTTGCTGACAAAACAGAAA
AAGCTGGTGAATATTCTGTGACATATGATGGATTCAATACATTTACTATACTTAAGACAGACTATGATAA
TTATATTATGTTTCATCTCATTAACAAAAAGGATGAGGAAAACTTCCAGCTGATGGAGCTCTTTGGTCGA
GAACCAGATTTGAGTTCAGACATCAAGGAAAAGTTTGCAAAACTATGTGAGGAGCATGGAATCGTTAGAG
AAAATATCATTGACCTATCCAATGCCAATCGCTGCCTCCAGGCCCGAGAATGA

Translation (180 aa):
MKLLLLLCLELTLVYVHAEEASSEGQNLNVEKINGKWFSILLASDKREKIEEHGTMRVFVEHIDVLENSL
AFKFHTVIDEECTEIYLVADKTEKAGEYSVTYDGFNTFTILKTDYDNYIMFHLINKKDEENFQLMELFGR
EPDLSSDIKEKFAKLCEEHGIVRENIIDLSNANRCLQARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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