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Report for CCDS18163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18163.1 Public Mus musculus 4 Nr4a3 23 108 98 CCDS HistoryNCBI Gene:18124Re-query CCDS DB by CCDS ID:18163.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030025.9 ENSMUSP00000030025.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030025.9Link to Ensembl Protein Viewer:ENSMUSP00000030025.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030025Re-query CCDS DB by Protein ID:ENSMUSP00000030025
Original member NCBI NM_015743.3 NP_056558.1 Updated not alive Link to Nucleotide Sequence:NM_015743.3Link to Protein Sequence:NP_056558.1Re-query CCDS DB by Nucleotide ID:NM_015743Re-query CCDS DB by Protein ID:NP_056558
Current member NCBI NM_015743.4 NP_056558.1 Accepted alive Link to Nucleotide Sequence:NM_015743.4Link to Protein Sequence:NP_056558.1Re-query CCDS DB by Nucleotide ID:NM_015743Re-query CCDS DB by Protein ID:NP_056558Link to BLAST:NP_056558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056558.1 627 Q9QZB6-1 627 100% 0 0

Chromosomal Locations for CCDS 18163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48051248 48052201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48055930 48056059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48056534 48056706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48067663 48067862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48070990 48071168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48083105 48083352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGCCCTGCGTGCAAGCCCAGTATAGCCCTTCACCTCCGGGGTCCACTTACGCCACGCAGACTTATGGCT
CGGAATACACCACAGAAATCATGAACCCCGACTACACCAAGCTGACCATGGACCTCGGTAGCACGGGGAT
CATGGCCACCGCCACTACATCCCTGCCCAGCTTCAGTACCTTCATGGAGGGCTACCCCAGCAGCTGCGAA
CTCAAGCCCTCCTGCCTGTACCAAATGCCGCCTTCTGGGCCTCGGCCTTTGATCAAGATGGAAGAGGGTC
GCGAGCATGGCTACCACCACCACCATCACCATCACCATCATCACCACCACCACCAGCAACAGCAGCCGTC
CATTCCTCCTCCCTCCGGCCCCGAGGACGAGGTACTGCCCAGCACCTCCATGTACTTCAAGCAGTCTCCG
CCTTCTACACCGACCACTCCAGGCTTCCCCCCGCAGGCGGGGGCGCTGTGGGACGACGAGCTGCCCTCTG
CGCCTGGCTGCATCGCTCCGGGACCGCTGCTGGACCCGCAGATGAAGGCGGTACCCCCCATGGCCGCTGC
TGCGCGCTTCCCGATCTTCTTCAAGCCCTCACCGCCACACCCTCCCGCGCCCAGTCCAGCCGGCGGCCAC
CACCTCGGCTATGACCCCACGGCCGCAGCTGCACTCAGTCTGCCCCTGGGAGCCGCGGCCGCAGCAGGCA
GCCAAGCTGCTGCGCTCGAGGGCCACCCATACGGGCTCCCGCTGGCCAAGAGGACGGCCACGCTGACCTT
CCCTCCGCTGGGCCTCACAGCCTCCCCCACCGCGTCCAGCCTGCTGGGAGAGAGCCCCAGCCTCCCATCG
CCACCCAATAGGAGCTCATCATCTGGGGAAGGCACATGTGCCGTGTGCGGCGACAACGCTGCCTGCCAGC
ACTACGGAGTCCGCACCTGCGAGGGCTGCAAGGGCTTCTTCAAGAGAACGGTGCAGAAAAATGCAAAATA
TGTTTGCCTGGCAAATAAAAACTGCCCAGTGGACAAGAGACGCCGAAACCGATGTCAGTACTGCAGATTT
CAGAAGTGTCTCAGTGTCGGGATGGTTAAGGAAGTTGTGCGTACAGACAGTCTGAAAGGGAGGAGAGGTC
GTCTGCCTTCCAAACCAAAGAGCCCACTACAACAGGAGCCCTCGCAGCCCTCCCCGCCATCTCCTCCGAT
CTGTATGATGAATGCCCTTGTCCGAGCTTTAACAGATGCAACACCCAGAGATCTTGATTATTCCAGATAC
TGTCCCACCGACCAGGCCACTGCAGGCACAGATGCTGAGCACGTGCAACAGTTCTACAACCTTCTGACGG
CCTCCATTGACGTGTCCAGAAGCTGGGCAGAAAAGATCCCAGGATTCACTGATCTCCCCAAAGAAGATCA
GACGTTACTTATAGAATCAGCCTTTTTGGAGCTGTTTGTTCTTAGACTTTCCATCAGGTCAAACACTGCT
GAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGAGGATTTGGGGAGT
GGCTCGACTCCATTAAAGACTTTTCTTTAAACTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTG
CCTGTCAGCACTGAGTATGATCACAGAGCGACATGGGTTAAAAGAACCAAAGAGAGTGGAGGAGCTATGC
ACCAAGATCACAAGCAGCTTAAAGGACCACCAGAGGAAGGGACAGGCTCTGGAGCCCTCGGAGCCTAAGG
TCCTGCGCGCGCTGGTAGAACTGAGAAAGATCTGTACCCAGGGCCTCCAGCGCATCTTCTACCTGAAGCT
AGAGGACTTGGTACCTCCACCTTCTGTCATCGACAAGCTCTTCCTTGACACCCTGCCTTTCTGA

Translation (627 aa):
MPCVQAQYSPSPPGSTYATQTYGSEYTTEIMNPDYTKLTMDLGSTGIMATATTSLPSFSTFMEGYPSSCE
LKPSCLYQMPPSGPRPLIKMEEGREHGYHHHHHHHHHHHHHQQQQPSIPPPSGPEDEVLPSTSMYFKQSP
PSTPTTPGFPPQAGALWDDELPSAPGCIAPGPLLDPQMKAVPPMAAAARFPIFFKPSPPHPPAPSPAGGH
HLGYDPTAAAALSLPLGAAAAAGSQAAALEGHPYGLPLAKRTATLTFPPLGLTASPTASSLLGESPSLPS
PPNRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRF
QKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPICMMNALVRALTDATPRDLDYSRY
CPTDQATAGTDAEHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTA
EDKFVFCNGLVLHRLQCLRGFGEWLDSIKDFSLNLQSLNLDIQALACLSALSMITERHGLKEPKRVEELC
TKITSSLKDHQRKGQALEPSEPKVLRALVELRKICTQGLQRIFYLKLEDLVPPPSVIDKLFLDTLPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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