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Report for CCDS39730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39730.1 Public Mus musculus 7 Pirb 23 108 98 CCDS HistoryNCBI Gene:18733Re-query CCDS DB by CCDS ID:39730.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078451.6 ENSMUSP00000077546.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078451.6Link to Ensembl Protein Viewer:ENSMUSP00000077546.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078451Re-query CCDS DB by Protein ID:ENSMUSP00000077546
Original member Current member NCBI NM_011095.2 NP_035225.2 Accepted alive Link to Nucleotide Sequence:NM_011095.2Link to Protein Sequence:NP_035225.2Re-query CCDS DB by Nucleotide ID:NM_011095Re-query CCDS DB by Protein ID:NP_035225Link to BLAST:NP_035225.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035225.2 841 P97484 841 100% 0 0

Chromosomal Locations for CCDS 39730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 3712651 3712830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3712908 3713063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3713820 3713872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3714097 3714134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3714209 3714284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3714587 3714703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3715682 3715732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3716034 3716336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3716594 3716890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3717118 3717426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3717552 3717836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3719182 3719487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3719637 3719921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3720103 3720138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3720293 3720326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2526 nt):
ATGTCCTGCACCTTCACAGCCCTGCTCCGTCTTGGACTGACTCTGAGCCTCTGGATCCCAGTGCTGACAG
GG
TCCCTCCCTAAGCCTATCCTCAGAGTACAGCCAGACTCTGTGGTCTCCAGGAGGACTAAGGTGACCTT
C
TTGTGTGAAGAGACAATTGGAGCCAATGAGTACCGCCTCTATAAAGATGGAAAGCTATATAAAACCGTA
ACA
AAGAACAAACAGAAGCCAGAAAACAAGGCTGAATTCTCATTCTCAAATGTAGACCTGAGTAATGCAG
GT
CAATATCGATGTTCCTACAGCACCCAGTATAAATCATCAGGCTACAGTGACCTCCTGGAGCTGGTGGT
G
ACAGGACACTACTGGACACCCAGCCTTTTAGCCCAAGCCAGCCCTGTGGTAACTTCAGGAGGGTATGTC
ACC
CTCCAGTGTGAGTCCTGGCACAACGATCACAAGTTCATTCTGACTGTAGAAGGACCACAGAAGCTCT
CG
TGGACACAAGACTCACAGTATAATTACTCTACAAGGAAGTACCACGCCCTGTTCTCTGTGGGCCCTGT
G
ACCCCCAACCAGAGATGGATATGCAGATGTTACAGTTATGACAGGAACAGACCATATGTGTGGTCACCT
CCA
AGTGAATCCGTGGAGCTCCTGGTCTCAGGTAATCTCCAAAAACCAACCATCAAGGCTGAACCAGGAT
CT
GTGATCACCTCCAAAAGAGCAATGACCATCTGGTGTCAGGGGAACCTGGATGCAGAAGTATATTTTCT
G
CATAATGAGAAAAGCCAAAAAACACAGAGCACACAGACCCTACAGGAGCCTGGGAACAAGGGCAAGTTC
TTC
ATCCCTTCTGTGACACTACAACATGCAGGGCAATATCGCTGTTATTGTTACGGCTCAGCTGGTTGGT
CA
CAGCCCAGTGACACCCTGGAGCTGGTGGTGACAGGAATCTATGAATACTATGAACCCAGGCTGTCAGT
A
CTGCCCAGCCCTGTGGTGACAGCTGGAGGGAACATGACACTCCACTGTGCCTCAGACTTTCCCTACGAT
AAA
TTCATTCTCACCAAGGAAGATAAGAAATTCGGCAACTCACTGGACACAGAGCATATATCTTCTAGTG
GA
CAGTACCGAGCCCTGTTTATTATAGGACCCACAACCCCAACCCATACAGGGGCATTCAGATGTTACGG
T
TACTACAAGAATGCCCCACAGCTGTGGTCAGTACCTAGTGCTCTCCAACAAATACTCATCTCAGGGCTG
TCC
AAGAAGCCCTCTCTGCTGACTCACCAAGGCCATATCCTGGACCCTGGAATGACCCTCACCCTGCAGT
GT
TTCTCTGACATCAACTATGACAGATTTGCTCTGCACAAGGTGGGGGGAGCTGACATCATGCAGCACTC
T
AGCCAGCAGACTGACACTGGCTTCTCTGTGGCCAACTTCACACTGGGCTATGTGAGTAGCTCCACTGGA
GGC
CAATACAGATGCTATGGTGCACACAACCTCTCCTCTGAGTGGTCAGCCTCCAGTGAGCCCCTGGACA
TC
CTGATCACAGGACAGCTCCCTCTCACTCCTTCCCTCTCAGTGCAGCCTAACCACACAGTGCACTCAGG
A
GAGACCGTGAGCCTGCTGTGTTGGTCAATGGACTCTGTGGATACTTTCATTCTGTCCAAGGAGGGATCA
GCC
CAGCAACCCCTGCGACTAAAATCAAAGTCCCATGATCAGCAGTCCCAGGCAGAATTCTCCATGAGTG
CT
GTGACCTCCCATCTCTCAGGCACCTACAGGTGCTATGGAGCTCAAGACTCATCTTTCTACCTCTTGTC
A
TCTGCCAGTGCCCCTGTGGAGCTCACAGTCTCAGGACCCATCGAAACCTCTACCCCGCCACCCACAATG
TCC
ATGCCACTAGGTGGACTGCATATGTACCTGAAGGCTCTCATTGGAGTGTCTGTGGCCTTCATCCTGT
TC
CTCTTCATCTTCATCTTCATTCTTCTTCGACGAAGACATCGGGGAAAATTCAGGAAAGATGTCCAGAA
A
GAGAAAGACTTGCAACTTTCTTCAGGAGCTGAAGAGCCCATAACCAGGAAAGGAGAACTCCAGAAGAGG
CCC
AACCCAGCTGCTGCCACCCAGGAAGAAAGCCTATATGCTTCAGTGGAGGACATGCAAACTGAGGATG
GA
GTGGAGCTGAACAGCTGGACACCACCTGAGGAAGATCCCCAGGGAGAGACTTATGCCCAGGTGAAACC
C
TCCAGGCTCAGGAAGGCAGGACATGTCTCACCTTCTGTCATGTCAAGGGAACAACTGAACACAGAATAT
GAA
CAAGCAGAAGAGGGCCAAGGAGCAAACAATCAGGCTGCCGAATCTGGGGAGTCCCAGGATGTGACCT
AT
GCCCAGCTGTGCAGCAGGACACTCAGACAGGGGGCAGCTGCATCTCCTCTCTCCCAGGCAGGGGAAGC
C
CCAGAGGAGCCCAGTGTATATGCTACTCTGGCGGCTGCTCGTCCAGAGGCTGTTCCCAAGGACATGGAG
CAA
TGA


Translation (841 aa):
MSCTFTALLRLGLTLSLWIPVLTGSLPKPILRVQPDSVVSRRTKVTFLCEETIGANEYRLYKDGKLYKTV
T
KNKQKPENKAEFSFSNVDLSNAGQYRCSYSTQYKSSGYSDLLELVVT
GHYWTPSLLAQASPVVTSGGYV
T
LQCESWHNDHKFILTVEGPQKLSWTQDSQYNYSTRKYHALFSVGPVTPNQRWICRCYSYDRNRPYVWSP
P
SESVELLVS
GNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKTQSTQTLQEPGNKGKF
F
IPSVTLQHAGQYRCYCYGSAGWSQPSDTLELVVT
GIYEYYEPRLSVLPSPVVTAGGNMTLHCASDFPYD
K
FILTKEDKKFGNSLDTEHISSSGQYRALFIIGPTTPTHTGAFRCYGYYKNAPQLWSVPSALQQILIS
GL
S
KKPSLLTHQGHILDPGMTLTLQCFSDINYDRFALHKVGGADIMQHSSQQTDTGFSVANFTLGYVSSSTG
G
QYRCYGAHNLSSEWSASSEPLDILIT
GQLPLTPSLSVQPNHTVHSGETVSLLCWSMDSVDTFILSKEGS
A
QQPLRLKSKSHDQQSQAEFSMSAVTSHLSGTYRCYGAQDSSFYLLSSASAPVELTVS
GPIETSTPPPTM
S
MPLG
GLHMYLKALIGVSVAFILFLFIFIFILLRRRHRGKFRKDVQKEKDLQLSSGAEEPITRKGELQKR
P
NPAAATQEESL
YASVEDMQTEDGVELNSWTPPEEDPQGETYAQVKPSRLRKAGHVSPSVMSREQLNTEY
E
QAEEGQGANNQ
AAESGESQDVTYAQLCSRTLRQGAAASPLSQAGEAPEEPSVYATLAAARPEAVPKDME
Q




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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