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Report for CCDS25785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25785.1 Public Mus musculus 12 Pomc 23 108 98 CCDS HistoryNCBI Gene:18976Re-query CCDS DB by CCDS ID:25785.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020990.6 ENSMUSP00000020990.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020990.6Link to Ensembl Protein Viewer:ENSMUSP00000020990.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020990Re-query CCDS DB by Protein ID:ENSMUSP00000020990
Original member Current member EBI ENSMUST00000218089.1 ENSMUSP00000151367.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218089.1Link to Ensembl Protein Viewer:ENSMUSP00000151367.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218089Re-query CCDS DB by Protein ID:ENSMUSP00000151367
Original member Current member EBI ENSMUST00000219543.1 ENSMUSP00000151504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219543.1Link to Ensembl Protein Viewer:ENSMUSP00000151504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219543Re-query CCDS DB by Protein ID:ENSMUSP00000151504
Original member Current member NCBI NM_001278581.1 NP_001265510.1 Accepted alive Link to Nucleotide Sequence:NM_001278581.1Link to Protein Sequence:NP_001265510.1Re-query CCDS DB by Nucleotide ID:NM_001278581Re-query CCDS DB by Protein ID:NP_001265510Link to BLAST:NP_001265510.1
Original member Current member NCBI NM_001278582.1 NP_001265511.1 Accepted alive Link to Nucleotide Sequence:NM_001278582.1Link to Protein Sequence:NP_001265511.1Re-query CCDS DB by Nucleotide ID:NM_001278582Re-query CCDS DB by Protein ID:NP_001265511Link to BLAST:NP_001265511.1
Original member Current member NCBI NM_001278583.1 NP_001265512.1 Accepted alive Link to Nucleotide Sequence:NM_001278583.1Link to Protein Sequence:NP_001265512.1Re-query CCDS DB by Nucleotide ID:NM_001278583Re-query CCDS DB by Protein ID:NP_001265512Link to BLAST:NP_001265512.1
Original member Current member NCBI NM_001278584.1 NP_001265513.1 Accepted alive Link to Nucleotide Sequence:NM_001278584.1Link to Protein Sequence:NP_001265513.1Re-query CCDS DB by Nucleotide ID:NM_001278584Re-query CCDS DB by Protein ID:NP_001265513Link to BLAST:NP_001265513.1
Original member Current member NCBI NM_008895.4 NP_032921.1 Accepted alive Link to Nucleotide Sequence:NM_008895.4Link to Protein Sequence:NP_032921.1Re-query CCDS DB by Nucleotide ID:NM_008895Re-query CCDS DB by Protein ID:NP_032921Link to BLAST:NP_032921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265510.1 235 P01193 235 100% 0 0
NP_001265511.1 235 P01193 235 100% 0 0
NP_001265512.1 235 P01193 235 100% 0 0
NP_001265513.1 235 P01193 235 100% 0 0
NP_032921.1 235 P01193 235 100% 0 0

Chromosomal Locations for CCDS 25785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3958129 3958260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3959893 3960468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCCGAGATTCTGCTACAGTCGCTCAGGGGCCCTGTTGCTGGCCCTCCTGCTTCAGACCTCCATAGATG
TGTGGAGCTGGTGCCTGGAGAGCAGCCAGTGCCAGGACCTCACCACGGAGAGCAACCTGCTGGCTTGCAT
CCGGGCTTGCAAACTCGACCTCTCGCTGGAGACGCCCGTGTTTCCTGGCAACGGAGATGAACAGCCCCTG
ACTGAAAACCCCCGGAAGTACGTCATGGGTCACTTCCGCTGGGACCGCTTCGGCCCCAGGAACAGCAGCA
GTGCTGGCAGCGCGGCGCAGAGGCGTGCGGAGGAAGAGGCGGTGTGGGGAGATGGCAGTCCAGAGCCGAG
TCCACGCGAGGGCAAGCGCTCCTACTCCATGGAGCACTTCCGCTGGGGCAAGCCGGTGGGCAAGAAACGG
CGCCCGGTGAAGGTGTACCCCAACGTTGCTGAGAACGAGTCGGCGGAGGCCTTTCCCCTAGAGTTCAAGA
GGGAGCTGGAAGGCGAGCGGCCATTAGGCTTGGAGCAGGTCCTGGAGTCCGACGCGGAGAAGGACGACGG
GCCCTACCGGGTGGAGCACTTCCGCTGGAGCAACCCGCCCAAGGACAAGCGTTACGGTGGCTTCATGACC
TCCGAGAAGAGCCAGACGCCCCTGGTGACGCTCTTCAAGAACGCCATCATCAAGAACGCGCACAAGAAGG
GCCAGTGA

Translation (235 aa):
MPRFCYSRSGALLLALLLQTSIDVWSWCLESSQCQDLTTESNLLACIRACKLDLSLETPVFPGNGDEQPL
TENPRKYVMGHFRWDRFGPRNSSSAGSAAQRRAEEEAVWGDGSPEPSPREGKRSYSMEHFRWGKPVGKKR
RPVKVYPNVAENESAEAFPLEFKRELEGERPLGLEQVLESDAEKDDGPYRVEHFRWSNPPKDKRYGGFMT
SEKSQTPLVTLFKNAIIKNAHKKGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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