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Report for CCDS19898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19898.1 Public Mus musculus 6 Pon1 23 108 98 CCDS HistoryNCBI Gene:18979Re-query CCDS DB by CCDS ID:19898.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002663.11 ENSMUSP00000002663.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002663.11Link to Ensembl Protein Viewer:ENSMUSP00000002663.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002663Re-query CCDS DB by Protein ID:ENSMUSP00000002663
Original member NCBI NM_011134.3 NP_035264.2 Updated not alive Link to Nucleotide Sequence:NM_011134.3Link to Protein Sequence:NP_035264.2Re-query CCDS DB by Nucleotide ID:NM_011134Re-query CCDS DB by Protein ID:NP_035264
Current member NCBI NM_011134.4 NP_035264.2 Accepted alive Link to Nucleotide Sequence:NM_011134.4Link to Protein Sequence:NP_035264.2Re-query CCDS DB by Nucleotide ID:NM_011134Re-query CCDS DB by Protein ID:NP_035264Link to BLAST:NP_035264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035264.2 355 P52430 355 100% 0 0

Chromosomal Locations for CCDS 19898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 5168338 5168496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5171741 5171869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5175742 5175823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5177210 5177410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5181439 5181565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5184746 5184914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5185298 5185353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5186934 5187004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 5193676 5193749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGCGAAGCTGCTAGCACTCACCCTCGTGGGACTGGTGTTGGCACTTTACAAGAACCATCGGTCTTCCT
ATCAAACAAGATTAAATGCTTTCCGTGAAGTAACGCCAGTAGAACTTCCTAACTGTAATTTAGTTAAAGG
AATCGAGACGGGTGCTGAAGACTTAGAGATTCTGCCTAATGGACTAACTTTCTTTAGCACTGGGCTAAAG
TATCCTGGAATAAAAAGTTTCGATCCCAGTAAGCCTGGAAAAATACTTCTGATGGACTTGAACAAGAAGG
AGCCAGCAGTGTCAGAGTTAGAAATTATAGGAAATACATTGGATATATCTTCATTTAACCCTCATGGGAT
TAGTACATTCACAGATGAAGATAACACTGTGTACCTACTGGTGGTAAACCATCCAGACTCCTCGTCCACT
GTGGAGGTATTTAAATTTCAAGAAGAGGAAAGATCACTCTTGCATCTGAAAACCATCACACATGAACTTC
TGCCTAGCATCAACGATATAGCTGCTATTGGACCTGAGAGCTTTTATGCCACAAATGATCACTATTTTGC
TGACCCATACTTACGGTCCTGGGAAATGTACTTGGGTCTGTCGTGGTCCAATGTTGTTTACTACAGTCCA
GATAAAGTCCAGGTGGTAGCAGAAGGGTTTGATTTCGCGAATGGCATTGGCATTTCCCTTGATGGCAAGT
ATGTCTATATAGCTGAATTGCTGGCTCACAAGATTCATGTGTATGAAAAGCATGCTAATTGGACTTTAAC
ACCATTGAAGGTCCTCAACTTTGACACCCTTGTGGATAACATCTCTGTGGATCCTGTGACAGGGGACCTC
TGGGTGGGATGCCATCCCAACGGAATGAGGATCTTTTTCTATGACGCAGAGAATCCTCCCGGCTCAGAGG
TGCTTCGAATCCAGAACATTTTATCCGAAGACCCCAAAATAACTGTAGTTTATGCAGAGAATGGTACCGT
CCTGCAAGGCACCACGGTCGCCTCTGTGTACAAAGGGAAACTGCTGATTGGCACTGTGTTCCACAAAGCT
CTTTACTGTGATCTGTGA

Translation (355 aa):
MAKLLALTLVGLVLALYKNHRSSYQTRLNAFREVTPVELPNCNLVKGIETGAEDLEILPNGLTFFSTGLK
YPGIKSFDPSKPGKILLMDLNKKEPAVSELEIIGNTLDISSFNPHGISTFTDEDNTVYLLVVNHPDSSST
VEVFKFQEEERSLLHLKTITHELLPSINDIAAIGPESFYATNDHYFADPYLRSWEMYLGLSWSNVVYYSP
DKVQVVAEGFDFANGIGISLDGKYVYIAELLAHKIHVYEKHANWTLTPLKVLNFDTLVDNISVDPVTGDL
WVGCHPNGMRIFFYDAENPPGSEVLRIQNILSEDPKITVVYAENGTVLQGTTVASVYKGKLLIGTVFHKA
LYCDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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