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Report for CCDS24448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24448.1 Public Mus musculus 11 Ppp3r1 23 108 98 CCDS HistoryNCBI Gene:19058Re-query CCDS DB by CCDS ID:24448.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102880.4 ENSMUSP00000099944.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102880.4Link to Ensembl Protein Viewer:ENSMUSP00000099944.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102880Re-query CCDS DB by Protein ID:ENSMUSP00000099944
Original member Current member NCBI NM_024459.2 NP_077779.2 Accepted alive Link to Nucleotide Sequence:NM_024459.2Link to Protein Sequence:NP_077779.2Re-query CCDS DB by Nucleotide ID:NM_024459Re-query CCDS DB by Protein ID:NP_077779Link to BLAST:NP_077779.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077779.2 170 Q63810-1 170 100% 0 0

Chromosomal Locations for CCDS 24448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 17159540 17159542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17182107 17182146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17192957 17193133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17194217 17194276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17194669 17194853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 17198259 17198306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGGAAATGAGGCGAGTTACCCTTTGGAAATGTGCTCACACTTTGATGCTGATGAAATTAAAAGGCTAG
GA
AAGAGATTCAAGAAGCTTGATTTGGACAATTCTGGTTCTTTGAGCGTGGAAGAGTTCATGTCTCTGCC
T
GAGTTACAGCAGAACCCTTTAGTACAGCGGGTAATAGATATATTCGACACAGACGGCAACGGAGAAGTG
GAC
TTCAAAGAATTCATTGAAGGAGTGTCTCAGTTCAGTGTCAAAGGCGATAAGGAACAGAAGTTGAGGT
TT
GCTTTTCGTATCTATGACATGGATAAAGATGGCTATATTTCCAATGGAGAACTCTTCCAGGTGTTGAA
G
ATGATGGTGGGCAACAATCTGAAAGATACACAATTACAGCAGATTGTAGACAAAACCATAATAAATGCA
GAT
AAGGATGGAGATGGAAGAATATCCTTTGAGGAATTCTGTGCTGTCGTAGGTGGCCTAGATATCCACA
AA
AAGATGGTGGTGGATGTGTGA


Translation (170 aa):
MGNEASYPLEMCSHFDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEV
D
FK
EFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINA
D
KDGDGRISFEEFCA
VVGGLDIHKKMVVDV



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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