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Report for CCDS23101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23101.1 Public Mus musculus 9 Abcg4 23 108 98 CCDS HistoryNCBI Gene:192663Re-query CCDS DB by CCDS ID:23101.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034648.15 ENSMUSP00000034648.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034648.15Link to Ensembl Protein Viewer:ENSMUSP00000034648.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000034648Re-query CCDS DB by Protein ID:ENSMUSP00000034648
Original member Current member EBI ENSMUST00000161354.8 ENSMUSP00000124647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161354.8Link to Ensembl Protein Viewer:ENSMUSP00000124647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161354Re-query CCDS DB by Protein ID:ENSMUSP00000124647
Original member Current member NCBI NM_138955.3 NP_620405.3 Accepted alive Link to Nucleotide Sequence:NM_138955.3Link to Protein Sequence:NP_620405.3Re-query CCDS DB by Nucleotide ID:NM_138955Re-query CCDS DB by Protein ID:NP_620405Link to BLAST:NP_620405.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620405.3 646 Q91WA9 646 100% 0 0

Chromosomal Locations for CCDS 23101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44274632 44274857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44275016 44275134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44275250 44275408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44277458 44277558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44277658 44277826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44278032 44278130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44278972 44279114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44279303 44279417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44279535 44279658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44281082 44281227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44281397 44281447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44281559 44281691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44281804 44281921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44287216 44287453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGGCGGAGAAGGCATTGGAGGCCGTGGGCTGTGGACTGGGCCCTGGGGCTGTGGCCATGGCTGTGACAC
TGGAGGACGGGGCAGAGCCCCCTGTGCTGACCACGCACCTAAAGAAGGTGGAGAACCATATCACAGAAGC
ACAGCGCTTCTCTCACCTGCCCAAGCGCTCTGCTGTGGACATCGAGTTCGTGGAACTGTCCTATTCCGTG
CGGGAGGGGCCCTGCTGGCGCAAACGGGGTTACAAGACCCTCCTCAAGTGCCTGTCTGGTAAGTTCTGTC
GCCGAGAGCTGATTGGCATCATGGGCCCCTCTGGGGCTGGCAAGTCCACATTCATGAACATCTTGGCAGG
GTACAGGGAGTCGGGGATGAAGGGGCAGATCCTGGTTAACGGGAGGCCGCGCGAGCTGAGGACCTTCCGC
AAGATGTCCTGCTACATCATGCAGGATGACATGCTACTGCCTCACCTCACAGTCCTGGAGGCCATGATGG
TCTCTGCCAACCTGAAGCTGAGTGAGAAGCAAGAGGTGAAGAAGGAACTGGTGACAGAGATCCTGACAGC
CCTGGGACTGATGTCCTGCTCTCACACGAGGACAGCTCTGCTCTCTGGAGGGCAGAGGAAGCGCCTGGCC
ATTGCTCTGGAACTGGTCAACAACCCGCCTGTCATGTTCTTTGATGAGCCTACCAGCGGTCTAGACAGCG
CTTCTTGTTTCCAAGTGGTGTCCCTCATGAAGTCCCTGGCCCATGGGGGCCGCACCGTCATCTGCACCAT
CCACCAGCCCAGTGCCAAGCTCTTTGAGATGTTTGACAAGCTCTACATCCTGAGCCAGGGGCAATGCATC
TTCAAGGGCGTGGTTACCAACCTGATTCCCTATCTGAAGGGGCTTGGCTTGCACTGTCCCACCTACCACA
ACCCCGCTGACTTCATCATTGAGGTGGCCTCTGGAGAGTATGGAGACCTGAACCCCATGCTGTTCAGGGC
TGTGCAGAATGGCCTTTGCACCATGGCCGAGAAGAAGAGCAGCCCTGGGAAGAATGAGCTCCCTGCCCAC
TGCCCCACTTGCCCTCCGGAGCTGGATCCTATTGAAAGCCACACATTTGCCACCAGCACCCTAACCCAGT
TCTGCATCCTCTTCAGGAGGACTTTCTTGTCCATCCTCAGGGACACGGTCCTGACCCACTTGCGGTTCAT
GTCACATGTGTTGATCGGCGTCCTCATTGGCCTCCTCTACCTGCACATTGGCGATGATGCCAGCAAAGTC
TTCAACAACACCGGCTTCCTCTTCTTTTCCATGCTCTTCCTCATGTTTGCAGCCCTCATGCCGACCGTGC
TCACCTTTCCCTTAGAGATGGCGGTCTTCATGAGGGAGCACTTGAACTACTGGTATACTCTCAAAGCCTA
TTACTTGGCCAAGACCATGGCTGATGTGCCCTTCCAGGTGGTATGCCCAGTGGTGTACTGCAGCATCGTG
TACTGGATGACAGGCCAGCCAGCCGAGACCAGCCGCTTCCTGCTCTTCTCAGCCTTGGCCATAGCCACCG
CCTTAGTTGCCCAGTCTTTGGGACTCTTGATTGGCGCTGCCTCTACCTCCTTGCAGGTGGCCACTTTTGT
GGGCCCAGTGACTGCCATCCCTGTCCTCTTGTTCTCCGGCTTCTTCGTCAGTTTCAAGACCATCCCCACT
TACTTGCAATGGAGCTCCTACCTCTCCTATGTTAGGTATGGCTTTGAGGGTCTGATCCTGACCATCTATG
GTATGGAGCGAGGACACCTGACCTGCTTAGATGAACAGTGCCCATTCCGGGACCCACAAATCATTTTGCG
TGAGCTGGATGTAGAGGAGGCCAAACTCTACATGGACTTCCTGGTCCTGGGCATTTTCTTCCTTGCCCTG
CGGCTGCTGGCATACCTTGTGCTCCGGTACCGGGTCAAGTCTGAGAGATAG

Translation (646 aa):
MAEKALEAVGCGLGPGAVAMAVTLEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSV
REGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFR
KMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLA
IALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICTIHQPSAKLFEMFDKLYILSQGQCI
FKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCTMAEKKSSPGKNELPAH
CPTCPPELDPIESHTFATSTLTQFCILFRRTFLSILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKV
FNNTGFLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYTLKAYYLAKTMADVPFQVVCPVVYCSIV
YWMTGQPAETSRFLLFSALAIATALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPT
YLQWSSYLSYVRYGFEGLILTIYGMERGHLTCLDEQCPFRDPQIILRELDVEEAKLYMDFLVLGIFFLAL
RLLAYLVLRYRVKSER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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