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Report for CCDS24784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24784.1 Public Mus musculus 11 Rai1 23 108 98 CCDS HistoryNCBI Gene:19377Re-query CCDS DB by CCDS ID:24784.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064190.12 ENSMUSP00000070896.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064190.12Link to Ensembl Protein Viewer:ENSMUSP00000070896.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064190Re-query CCDS DB by Protein ID:ENSMUSP00000070896
Original member Current member EBI ENSMUST00000102688.1 ENSMUSP00000099749.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102688.1Link to Ensembl Protein Viewer:ENSMUSP00000099749.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102688Re-query CCDS DB by Protein ID:ENSMUSP00000099749
Original member Current member EBI ENSMUST00000171108.7 ENSMUSP00000126183.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171108.7Link to Ensembl Protein Viewer:ENSMUSP00000126183.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171108Re-query CCDS DB by Protein ID:ENSMUSP00000126183
Original member Current member NCBI NM_001037764.1 NP_001032853.1 Accepted alive Link to Nucleotide Sequence:NM_001037764.1Link to Protein Sequence:NP_001032853.1Re-query CCDS DB by Nucleotide ID:NM_001037764Re-query CCDS DB by Protein ID:NP_001032853Link to BLAST:NP_001032853.1
Original member Current member NCBI NM_009021.2 NP_033047.2 Accepted alive Link to Nucleotide Sequence:NM_009021.2Link to Protein Sequence:NP_033047.2Re-query CCDS DB by Nucleotide ID:NM_009021Re-query CCDS DB by Protein ID:NP_033047Link to BLAST:NP_033047.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032853.1 1889 Q61818-1 1889 100% 0 0
NP_033047.2 1889 Q61818-1 1889 100% 0 0

Chromosomal Locations for CCDS 24784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60185112 60190622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60193939 60194032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60197789 60197838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60198031 60198045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5670 nt):
ATGCAGTCTTTTCGAGAAAGGTGTGGTTTCCATGGCAAACAGCAAAACTACCCACAGACCTCCCAGGAGA
CATCGCGCCTGGAGAACTACAGGCAGCCGGGTCAGGCTGGGCTAAGCTGTGATCGGCAGCGGCTGCTGGC
CAAGGACTACTACAGCCCTCAGCCCTATACAGGCTATGAGGGTGGCACTGGTACACCTTCTGGCACGGTG
GCCACAGCAGCTGCAGACAAGTACCACCGAGGCAGCAAATCCCTGCAGGGGAGGCCAGCTTTCCCCAGCT
ATGTTCAAGACAGCAGCCCCTACCCAGGGCGCTACTCTGGCGAGGAAGGTCTTCAGACCTGGGGGGGCCC
ACAGCCACCGCCTCCTCAGCCACAGCCTCTGCCCGGGGCAGTGAGCAAGTATGAGGAGAACCTGATGAAG
AAGACAGTTGTGCCTCCTCCAAACAGGCAGTACCCTGAGCAGGGCCCCCAGCTTCCCTTCCGGACTCACA
GCCTGCATGTCCCACCACCACAGCCTCAGCAGCCCCTGGCTTACCCCAAACTCCAAAGGCAGAAACCACA
GAACGACCTTGCCTCCCCTCTGCCCTTCCCCCAGGGCAGCCACTTTCCCCAGCATTCCCAGTCCTTCCCT
ACCTCCTCCACTTATGCCCCAACAGTGCAGGGTGGTGGGCAGGGGGCCCACTCCTACAAGAGCTGCACAG
CACCATCTGCCCAGCCTCATGATAGGCCGATGAGTGCCAATGCGAACCTGGCTCCAGGGCAACGGGTCCA
GAATCTTCACGCTTACCAGCCTGGCCGCCTTGGCTACGAGCAGCAGCAGCAAGCACTTCAAGGCCGTCAC
CACACCCAGGAAACACTCCACTACCAGAACCTCGCCAAGTACCAACACTATGGACAGCAAGGCCAGGGCT
ACTGTCCACCGGACACAGCTGTCAGGACTCCAGAGCAGTATTACCAGACTTTCAGCCCGAGCTCCAGCCA
CTCCCCTGCACGGTCTGTGGGTCGCTCCCCTTCCTATAGCTCCACCCCGTCACCACTGATGCCCAATCTG
GAGAACTTCCCCTATAGCCAGCAGCCGCTTAGTACTGGGGCCTTCCCCACAGGCATCACAGACCACAGCC
ACTTTATGCCCCTGCTTAACCCGTCCCCAACAGATGCTGCCAGCTCTGTGGACCCCCAGGCCGGCAACTG
CAAGCCCCTGCAAAAGGAGAAGCTGCCTGACAACTTGCTCTCCGACCTCAGCCTGCAGAGCCTCACAGCG
CTCACCTCCCAGGTGGAAAACATCTCCAACACCGTGCAGCAGCTCTTGCTGTCCAAAGCTACCATGCCAC
AGAAGAAAGGGGTCAAGAACCTCGTGTCCAGGACTCCAGAGCAGCACAAAAGCCAGCACTGTAGCCCTGA
AGGCAGCGGCTACTCAGCTGAGCCAGCGGGCACACCGCTGTCTGAGCCGCCGAGCAGCACGCCACAGTCC
ACCCATGCTGAGCCACAGGACACTGACTACCTGAGTGGCTCTGAGGACCCGCTAGAGCGCAGCTTCCTCT
ACTGCAGCCAGGCCCGGGGCAGCCCCGCCAGGGTCAACAGCAACTCCAAGGCTAAGCCCGAGTCTGTGTC
CACCTGTTCTGTGACCTCACCTGATGACATGTCCACCAAGTCCGACGACTCTTTCCAGAGCCTGCACAGT
ACTCTGCCCCTGGACAGCTTCTCCAAATTTGTGGCAGGCGAGCGGGACTGCCCGCGGCTGCTGCTCAGTG
CCCTGGCACAGGAAGATCTGGCCTCCGAGATCCTGGGACTGCAGGAAGCCATTGTTGAGAAGGCTGACAA
GGCCTGGGCTGAGGCTTCCAGCCTGCCCAAGGACAATGGCAAGCCACCCTTCTCACTGGAGAACCATGGC
GCCTGCCTGGACACTGTAGCAAAGACTTCATGGTCACAGCCAGGGGAGCCAGAGACCCTCCCTGAGCCTT
TGCAGCTGGACAAGGGTGGCAGCACCAAGGACTTCAGCCCGGGGCTGTTTGAAGACCCCTCTGTGGCCTT
TGCCACCACTGACCCGAAGAAAACAAGCAGTCCCCTGTCCTTCGGCACCAAGCCTTTGCTAGGGACTGCC
ACTCCTGACCCCACCACAGCAGCATTTGACTGCTTTCCAGATACACCCACTGCCAGCTCGGTGGATGGTG
CCAACCCCTTTGCCTGGCCAGAGGAGAACCTGGGCGATGCTTGTCCTCGTTGGGGCCTCCACCCTGGTGA
GCTTACCAAGGGCTTGGAACAGGGTGCAAAAGCCTCGGACGGCGTGGGCAAGGCAGATGCACACGAGGCC
TCTGCTTGCATGGGCTTCCAGGAGGATCATGCCATCGGGAAGCCAGCAGCCGCACTGTCCGGGGACTTCA
AACAGCAGGAGGCAGAGGGGGTGAAAGAGGAGGTGGGTGGGTTGCTGCAGTGCCCCGAGGTGGCCAAGGC
CAACCAGTGGCTGGAGGAGAGCCGCCATTGCTGTTCCTCCACTGACTTCGGGGACCTGCCACTGTTGCCG
CCCCCTGGCAGGAAGGAGGACCTGGAAGCTGAAGAGGAGTACTCTTCTCTGTGTGAACTGCTGGGGAGCC
CTGAGCAGAGGCCCAGCCTGCAGGACCCGTTGTCCCCAAAGGCCCCGCTGATGTGCACCAAGGAGGAGGC
AGAGGAGGCGCTGGACACCAAGGCTGGCTGGGTCTCTCCATGTCACCTCTCTGGGGAGCCTGCTGTCCTA
CTGGGCCCCTCTGTGGGTGCCCAATCAAAGGTTCAGAGCTGGTTTGAATCTTCTCTGTCACACATGAAGC
CGGGAGAAGAAGGGCCAGAGATGGAGAGGGCTCCAGGTAGTTCCGGCACCTCACAAGGCTCCTTGGCCCC
GAAGCCTAACAAGCCTGCTGTACCTGAGGGGCCCATTGCTAAGAAAGAGCCTGTGCCACGGGGTAAGAGC
TTACGGAGCCGGCGAGTACACCGGGGGCTGCCTGAGGCGGAAGACTCTCCGTGCAGGGTGCCAGCACTTC
CCAAAGACCTCTTGCTCCCAGAGTCTTGCACAGGGCCTCCACAGGGACAGGCCGAGGGGGCTGGAGCCCC
AGGCCGGGGGCTGTCAGAAGGGCTCCCCAGAATGTGTACCCGCTCGCTTACAGCTCTGAGTGAGCCCCAG
ACTCCTGGACCTCCGGGCCTGACTACCACCCCCACGCCTCCCGACAAACTGGGAGGTAAGCAGCGAGCTG
CCTTCAAGTCTGGCAAGCGGGTCGGAAAACCATCACCCAAGGCTGCATCCAGCCCCAGCAACCCTGCTGC
CCTGCCTGTTGCCTCAGACAGCAGCCCCATGGGCTCCAAGACCAAGGAGCCAGACTCTCCCAGCATGCCT
GGCAAGGACCAGCGCTCCATGGTCCTCCGGTCTCGCACCAAACCCCAGCAGGTCTTCCATGCCAAACGGC
GGCGGCCCTCGGAGAGCCGGATCCCAGACTGCCGTGCCACCAAGAAGCTCCCTGCTAACAACCATTTACC
CACTGCGTACAAGGTCTCCAGTGGGCCCCAGAAGGAAGGTCGGATGAACCAGCGGGTCAAAGTACCCAAG
CCTGGTACAGGAAACAAGCTTTCAGATCGGCCTCTCCACACGCTCAAGAGGAAGTCGGCTTTCATGGCAC
CTGTCCCCGCCAAAAAACGGAGCCTCATCCTGAGAAGCAACAATGGAAGTGGGGGAGACGGGAGGGAGGA
GAGGGCTGAGAGTTCCCCTGGCCTCTTACGGAGGATGGCCTCACCCCAGAGGGCCAGACCCAGGGGTAGT
GGGGAGCCACCCCCACCCCCACCCTTGGAGCCACCTGCTGCATGCATGGGGTTGTCTACACAGTCATCCC
TGCCCAGTGCTGTGAGGACCAAGGTGCTGCCACCGCGAAAGGGCCGCGGCCTCAAGCTGGAGGCCATAGT
ACAGAAGATCACCTCACCTGGGCTCAAGAAACTCGCATGCAGAGTGGCAGGGGCCCCTCCTGGGACACCC
CGGAGCCCAGCCCTGCCTGAGAGACGTCCAGGGGGCAGTCCAGCCGGGGCGGAAGAGGGTTTAGGAGGAA
TGGGGCAAATGCTACCAGCAGCTTCCGGAGCTGACCCATTGTGCAGGAACCCAGCCAGCAGGTCCCTAAA
AGGTAAACTCTTGAACAGTAAGAAGCTGTCCTCTGCTGCTGACTGCCCCAAAGCTGAGGCCTTCATGTCC
CCGGAGACCCTGCCATCACTAGGGACTGCCCGAGCACCGAAGAAAAGGAGCCGGAAAGGCAGAACTGGGA
CCTTGGGACCCTCCAAAGGTCCGTTGGAGAAGCGGCCATGTCCGGGCCAGCCTCTGCTCCTCGCTCCCCA
CGACAGGGCCAGCAGCACTCAGGGCGGAGGCGAGGACAACTCCAGTGGAGGAGGCAAGAAGCCAAAGACA
GAGGAGCTGGGACCGGCCTCCCAGCCCCCTGAAGGCCGGCCCTGCCAGCCCCAGACAAGGGCGCAGAAGC
AGCCGGGCCAAGCCAGCTACAGCAGCTATTCCAAGCGGAAGCGCCTCAGCCGAGGCCGGGGGAAGACCGC
CCACGCTTCACCCTGTAAGGGACGTGCCACTCGGAGAAGGCAGCAGCAGGTACTGCCCCTGGATCCTGCA
GAGCCTGAAATCCGACTCAAATACATTTCCTCTTGCAAGAGGCTGCGGGCAGACAGCCGCACCCCAGCCT
TCTCGCCCTTTGTGCGGGTGGAGAAGCGAGATGCTTACACCACCATATGCACTGTCGTCAACTCCCCGGG
GGATGAGCCGAAGCCTCACTGGAAGCCATCCTCCTCTGCTGCCTCCTCCTCCACCTCTTCCTCCTCCTTA
GAACCAGCTGGGGCTTCTCTGACCACATTCCCTGGAGGCTCTGTGCTGCAGCAGAGGCCCTCCCTGCCCC
TCTCCTCCACCATGCATCTGGGGCCTGTGGTGTCCAAGGCCCTAAGTACCTCTTGCCTTGTCTGCTGCCT
CTGCCAAAACCCGGCCAATTTCAAGGACCTTGGGGACCTCTGTGGCCCCTACTACCCTGAACACTGCCTC
CCCAAAAAGAAGCCAAAACTCAAGGAGAAGGCGCGGCTGGAGGGCACCTTGGAGGAGGCCTCTCTGCCTC
TCGAGAGAACACTCAAAGGCCTGGAATGTTCGGCCAGCACCACGGCTGCCGCCCCTACCACAGCCACTAT
CACTACCCCCACGGCCCTGGGGAGACTGTCCAGGCCCGATGGCCCAGCTGACCCTGCCAAGCAGGGCCCC
CTGCGCACCAGTGCCCGGGGCCTGTCACGGCGGCTGCAGAGTTGCTATTGCTGTGATGGTCAGGGGGACG
GGGGTGAGGAGGTGGCCCAGGCTGACAAGAGCCGCAAACATGAATGCAGCAAAGAGGCCCCTACAGAACC
TGGTGGGGACACCCAGGAACACTGGGTCCATGAGGCCTGTGCTGTGTGGACCAGCGGGGTGTACCTGGTG
GCCGGGAAGCTCTTTGGGCTGCAGGAGGCCATGAAGGTAGCTGTGGACATGCCGTGTACCAGCTGTCACG
AGCCCGGGGCGACCATCTCGTGCTCCTATAAAGGATGTATCCACACCTACCACTACCCATGTGCCAATGA
CACAGGTTGCACGTTCATTGAGGAGAATTTTACTTTGAAGTGCCCCAAACATAAGAGGCTGCCGTTGTAA

Translation (1889 aa):
MQSFRERCGFHGKQQNYPQTSQETSRLENYRQPGQAGLSCDRQRLLAKDYYSPQPYTGYEGGTGTPSGTV
ATAAADKYHRGSKSLQGRPAFPSYVQDSSPYPGRYSGEEGLQTWGGPQPPPPQPQPLPGAVSKYEENLMK
KTVVPPPNRQYPEQGPQLPFRTHSLHVPPPQPQQPLAYPKLQRQKPQNDLASPLPFPQGSHFPQHSQSFP
TSSTYAPTVQGGGQGAHSYKSCTAPSAQPHDRPMSANANLAPGQRVQNLHAYQPGRLGYEQQQQALQGRH
HTQETLHYQNLAKYQHYGQQGQGYCPPDTAVRTPEQYYQTFSPSSSHSPARSVGRSPSYSSTPSPLMPNL
ENFPYSQQPLSTGAFPTGITDHSHFMPLLNPSPTDAASSVDPQAGNCKPLQKEKLPDNLLSDLSLQSLTA
LTSQVENISNTVQQLLLSKATMPQKKGVKNLVSRTPEQHKSQHCSPEGSGYSAEPAGTPLSEPPSSTPQS
THAEPQDTDYLSGSEDPLERSFLYCSQARGSPARVNSNSKAKPESVSTCSVTSPDDMSTKSDDSFQSLHS
TLPLDSFSKFVAGERDCPRLLLSALAQEDLASEILGLQEAIVEKADKAWAEASSLPKDNGKPPFSLENHG
ACLDTVAKTSWSQPGEPETLPEPLQLDKGGSTKDFSPGLFEDPSVAFATTDPKKTSSPLSFGTKPLLGTA
TPDPTTAAFDCFPDTPTASSVDGANPFAWPEENLGDACPRWGLHPGELTKGLEQGAKASDGVGKADAHEA
SACMGFQEDHAIGKPAAALSGDFKQQEAEGVKEEVGGLLQCPEVAKANQWLEESRHCCSSTDFGDLPLLP
PPGRKEDLEAEEEYSSLCELLGSPEQRPSLQDPLSPKAPLMCTKEEAEEALDTKAGWVSPCHLSGEPAVL
LGPSVGAQSKVQSWFESSLSHMKPGEEGPEMERAPGSSGTSQGSLAPKPNKPAVPEGPIAKKEPVPRGKS
LRSRRVHRGLPEAEDSPCRVPALPKDLLLPESCTGPPQGQAEGAGAPGRGLSEGLPRMCTRSLTALSEPQ
TPGPPGLTTTPTPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKEPDSPSMP
GKDQRSMVLRSRTKPQQVFHAKRRRPSESRIPDCRATKKLPANNHLPTAYKVSSGPQKEGRMNQRVKVPK
PGTGNKLSDRPLHTLKRKSAFMAPVPAKKRSLILRSNNGSGGDGREERAESSPGLLRRMASPQRARPRGS
GEPPPPPPLEPPAACMGLSTQSSLPSAVRTKVLPPRKGRGLKLEAIVQKITSPGLKKLACRVAGAPPGTP
RSPALPERRPGGSPAGAEEGLGGMGQMLPAASGADPLCRNPASRSLKGKLLNSKKLSSAADCPKAEAFMS
PETLPSLGTARAPKKRSRKGRTGTLGPSKGPLEKRPCPGQPLLLAPHDRASSTQGGGEDNSSGGGKKPKT
EELGPASQPPEGRPCQPQTRAQKQPGQASYSSYSKRKRLSRGRGKTAHASPCKGRATRRRQQQVLPLDPA
EPEIRLKYISSCKRLRADSRTPAFSPFVRVEKRDAYTTICTVVNSPGDEPKPHWKPSSSAASSSTSSSSL
EPAGASLTTFPGGSVLQQRPSLPLSSTMHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYYPEHCL
PKKKPKLKEKARLEGTLEEASLPLERTLKGLECSASTTAAAPTTATITTPTALGRLSRPDGPADPAKQGP
LRTSARGLSRRLQSCYCCDGQGDGGEEVAQADKSRKHECSKEAPTEPGGDTQEHWVHEACAVWTSGVYLV
AGKLFGLQEAMKVAVDMPCTSCHEPGATISCSYKGCIHTYHYPCANDTGCTFIEENFTLKCPKHKRLPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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