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Report for CCDS30417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30417.1 Public Mus musculus X Bex1 23 108 98 CCDS HistoryNCBI Gene:19716Re-query CCDS DB by CCDS ID:30417.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058125.8 ENSMUSP00000060005.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058125.8Link to Ensembl Protein Viewer:ENSMUSP00000060005.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058125Re-query CCDS DB by Protein ID:ENSMUSP00000060005
Original member Current member EBI ENSMUST00000113118.1 ENSMUSP00000108743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113118.1Link to Ensembl Protein Viewer:ENSMUSP00000108743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113118Re-query CCDS DB by Protein ID:ENSMUSP00000108743
Original member Current member EBI ENSMUST00000113120.1 ENSMUSP00000108745.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113120.1Link to Ensembl Protein Viewer:ENSMUSP00000108745.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113120Re-query CCDS DB by Protein ID:ENSMUSP00000108745
Original member Current member NCBI NM_009052.2 NP_033078.2 Accepted alive Link to Nucleotide Sequence:NM_009052.2Link to Protein Sequence:NP_033078.2Re-query CCDS DB by Nucleotide ID:NM_009052Re-query CCDS DB by Protein ID:NP_033078Link to BLAST:NP_033078.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033078.2 128 Q9R224 128 100% 0 0

Chromosomal Locations for CCDS 30417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136214192 136214578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGGAGTCCAAAGATCAAGGCGTGAAAAATCTCAACATGGAGAATGACCATCAGAAAAAGGAGGAGAAGG
AA
GAAAAGCCACAAGATACCATCAGAAGGGAGCCAGCTGTGGCCCTGACCTCCGAGGCTGGCAAAAACTG
T
GCACCTAGAGGAGGTCGCAGGCGGTTCCGGGTTCGGCAGCCCATCGCTCACTATAGATGGGACCTGATG
CAG
AGGGTTGGGGAGCCCCAGGGAAGGATGAGAGAGGAGAACGTACAGAGGTTTGGGGGTGATGTGAGAC
AG
CTCATGGAGAAGCTGAGGGAAAGGCAGCTGAGCCACAGCCTGCGGGCGGTTAGCACTGACCCGCCTCA
T
CATGACCACCATGATGAGTTTTGCCTCATGCCCTGA


Translation (128 aa):
MESKDQGVKNLNMENDHQKKEEKEEKPQDTIRREPAVALTSEAGKNCAPRGGRRRFRVRQPIAHYRWDLM
Q
RVGEPQGRMREENVQRFGGDVRQLMEKLRERQLSHSLRAVSTDPPHHDHHDEFCLMP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser