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Report for CCDS15693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15693.1 Public Mus musculus 2 Rsu1 23 108 98 CCDS HistoryNCBI Gene:20163Re-query CCDS DB by CCDS ID:15693.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028059.8 ENSMUSP00000028059.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028059.8Link to Ensembl Protein Viewer:ENSMUSP00000028059.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028059Re-query CCDS DB by Protein ID:ENSMUSP00000028059
Original member NCBI NM_009105.4 NP_033131.2 Updated not alive Link to Nucleotide Sequence:NM_009105.4Link to Protein Sequence:NP_033131.2Re-query CCDS DB by Nucleotide ID:NM_009105Re-query CCDS DB by Protein ID:NP_033131
Current member NCBI NM_009105.5 NP_033131.2 Accepted alive Link to Nucleotide Sequence:NM_009105.5Link to Protein Sequence:NP_033131.2Re-query CCDS DB by Nucleotide ID:NM_009105Re-query CCDS DB by Protein ID:NP_033131Link to BLAST:NP_033131.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033131.2 277 Q01730 277 98.556% 0 4

Chromosomal Locations for CCDS 15693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 13077505 13077607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13169998 13170130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13216770 13216884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13217189 13217271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13219009 13219127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13224305 13224425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13241745 13241795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13270911 13271019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGTCCAAGTCACTGAAGAAGCTGGTGGAGGAGAGCAGGGAGAAGAACCAGCCGGAAGTGGACATGAGTG
ACAGGGGTATCTCCAGTATGTTGGATGTCAACGGCTTGTTCTCTCTAGCCCACATCACACAACTGGTGCT
CAGCCACAACAAGCTAACAACTGTGCCACCAAATGTAGCGGAACTGAAGAACTTGGAGGTACTAAACTTC
TTCAACAATCAGATCGAGGAACTGCCTACCCAGATCAGCAGCCTCCAGAAACTCAAACACCTGAACCTTG
GCATGAATAGGTTGAACACGCTGCCTCGAGGATTCGGCTCCCTCCCGGCTCTGGAGGTCCTGGACTTAAC
TTACAACAACCTGAATGAACATTCTCTTCCGGGAAACTTCTTCTACCTCACCACCCTGCGTGCACTCTAT
CTAAGCGACAACGATTTTGAAATCCTGCCTCCAGATATTGGGAAGCTCACAAAGTTGCAGATACTCAGCC
TCAGGGATAATGACCTGATCTCACTGCCTAAGGAAATCGGGGAGCTGACCCAGCTGAAGGAGCTCCACAT
TCAGGGGAACCGCCTGACCGTTCTGCCTCCAGAGCTTGGCAACTTGGATCTAACTGGTCAGAAGCAGGTC
TTCAAAGCAGAGAACAACCCCTGGGTTACCCCGATTGCTGACCAGTTCCAGCTTGGCGTCTCCCACGTTT
TCGAATATATTCGTTCAGAAACTTACAAGTACCTCTACGGCAGACACATGCAAGCGAACCCAGAACCTCC
AAAGAAGAATAACGACAAATCAAAAAAGATCAGCCGGAAACCCCTAGCAGCCAAGAACAAATGA

Translation (277 aa):
MSKSLKKLVEESREKNQPEVDMSDRGISSMLDVNGLFSLAHITQLVLSHNKLTTVPPNVAELKNLEVLNF
FNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLNEHSLPGNFFYLTTLRALY
LSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQV
FKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYLYGRHMQANPEPPKKNNDKSKKISRKPLAAKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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