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Report for CCDS71063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71063.1 Public Mus musculus 2 Scn9a 23 108 98 CCDS HistoryNCBI Gene:20274Re-query CCDS DB by CCDS ID:71063.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100064.8 ENSMUSP00000097642.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100064.8Link to Ensembl Protein Viewer:ENSMUSP00000097642.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100064Re-query CCDS DB by Protein ID:ENSMUSP00000097642
Original member Current member NCBI NM_001290674.1 NP_001277603.1 Accepted alive Link to Nucleotide Sequence:NM_001290674.1Link to Protein Sequence:NP_001277603.1Re-query CCDS DB by Nucleotide ID:NM_001290674Re-query CCDS DB by Protein ID:NP_001277603Link to BLAST:NP_001277603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277603.1 1984 Q62205 1984 100% 0 0

Chromosomal Locations for CCDS 71063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 66483418 66484604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66487375 66487645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66487982 66488086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66493079 66493216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66493886 66493939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66494609 66494890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66501613 66501735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66504849 66505022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66508520 66508674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66515315 66515432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66526608 66527084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66533062 66533418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66534114 66534287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66536098 66536336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66537270 66537399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66540264 66540635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66543035 66543319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66547023 66547229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66548980 66549121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66550340 66550403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66562346 66562558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66563540 66563631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66565103 66565231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66565778 66565867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66566171 66566289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66568007 66568264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5955 nt):
ATGGCGATGTTGCCTCCGCCAGGACCTCAGAGCTTCGTTCACTTCACAAAACAGTCCCTTGCCCTCATTG
AACAACGCATTTCTGAAGAAAAAGCCAAGGGACACAAAGATGAAAAGAAAGATGATGAGGAAGAAGGTCC
CAAGCCCAGTAGTGACTTGGAAGCAGGTAAACAGCTACCCTTCATCTACGGAGACATTCCCCCGGGAATG
GTGTCAGAGCCCCTGGAGGACCTGGACCCATACTATGCAGACAAAAAAACTTTTATAGTATTGAACAAAG
GGAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTTTGTACATGCTGTCTCCCTTCAGTCCTCTCAGAAG
AATATCTATTAAGATTTTAGTGCACTCCTTATTCAGCATGCTAATCATGTGCACAATTCTGACAAACTGC
ATATTCATGACCATGAGCAACCCTCCAGATTGGACCAAAAACGTAGAGTACACTTTTACTGGGATATATA
CTTTTGAATCACTCATAAAAATCCTTGCAAGAGGCTTTTGCGTGGGCGAATTCACCTTCCTCCGTGACCC
TTGGAACTGGCTGGACTTTGTTGTCATTGTTTTTGCGTATTTAACAGAATTTGTAAACCTAGGCAATGTT
TCAGCTCTTCGAACTTTCAGAGTCTTGAGAGCTTTGAAAACTATTTCTGTAATTCCAGGACTAAAAACCA
TCGTGGGGGCCCTGATCCAATCAGTGAAGAAGCTCTCTGACGTCATGATCCTCACTGTGTTCTGTCTCAG
TGTGTTCGCACTAATTGGACTACAACTGTTTATGGGCAACTTGAAGCATAAATGTTTCCGGAAGGACCTT
GAGCAGAATGAAACATTAGAAAGCATCATGAGTACTGCTGAGAGTGAAGAAGAATTGAAAAGATATTTTT
ATTACTTGGAGGGATCCAAAGATGCTCTTCTTTGCGGTTTCAGCACAGATTCAGGGCAGTGTCCTGAAGG
GTACGAGTGTGTGACAGCTGGCAGAAACCCAGATTATGGCTACACAAGCTTTGACACGTTCGGCTGGGCC
TTCTTGGCCTTGTTTCGGCTAATGACTCAGGACTACTGGGAGAACCTTTATCAACAGACACTGCGTGCTG
CTGGCAAAACCTACATGATTTTCTTTGTCGTGGTGATATTTCTGGGATCCTTTTACCTGATAAACTTGAT
CCTGGCTGTGGTAGCCATGGCGTACGAGGAACAGAACCAGGCCAACATCGAAGAAGCTAAACAGAAAGAG
TTAGAATTTCAGCAGATGTTAGACCGACTCAAAAAAGAGCAGGAAGAAGCCGAGGCGATCGCTGCAGCCG
CTGCTGAGTACACGAGTTTAGGGCGGAGCAGGATTATGGGACTCTCTGAGAGCTCTTCAGAAACCTCCAG
GCTGAGCTCAAAGAGTGCCAAGGAGAGAAGAAACCGAAGAAAGAAAAAAAAACAGAAGCTGTCCAGTGGC
GAGGAAAAGGGTGATGATGAGAAGCTGTCCAAGTCAGGGTCAGAGGAAAGCATCCGAAAGAAAAGCTTCC
ATCTCGGCGTGGAAGGGCACCACCGGGCCAGGGAAAAGAGGCTGTCCACCCCCAACCAGTCACCACTCAG
CATTCGTGGGTCCTTGTTTTCTGCCAGGCGCAGCAGCAGAACAAGTCTCTTCAGTTTTAAGGGGCGAGGA
AGAGATCTGGGATCTGAAACGGAATTTGCTGATGATGAGCATAGCATTTTTGGAGACAACGAGAGCAGAA
GGGGTTCACTATTTGTACCCCATAGACCCCGGGAGCGGCGCAGCAGTAACATCAGCCAGGCCAGTAGGTC
CCCACCAGTGCTGCCGGTGAACGGGAAGATGCACAGTGCAGTGGACTGCAATGGCGTGGTGTCGCTTGTT
GATGGACCCTCAGCCCTCATGCTCCCCAATGGACAGCTTCTTCCAGAGGTGATAATAGATAAGGCAACTT
CCGACGACAGCGGCACAACTAATCAGATGCGTAAAAAAAGGCTCTCTAGTTCTTACTTTTTGTCTGAGGA
CATGCTGAATGACCCACATCTCAGGCAAAGGGCCATGAGCAGAGCAAGCATTCTAACCAACACAGTAGAA
GAACTTGAAGAATCTAGACAAAAATGTCCACCATGGTGGTACAGATTTGCTCACACATTTTTAATCTGGA
ATTGTTCTCCATATTGGATAAAATTCAAAAAGTTCATCTATTTTATTGTAATGGATCCTTTTGTAGATCT
TGCAATTACCATTTGCATAGTTTTAAACACCTTGTTTATGGCTATGGAGCACCATCCAATGACGGATGAA
TTCAAAAATGTACTTGCAGTCGGGAACCTGGTCTTCACAGGGATCTTCGCAGCTGAAATGGTACTGAAGT
TAATAGCCATGGATCCCTATGAATATTTCCAAGTAGGGTGGAATATTTTTGACAGCCTGATTGTGACGTT
GAGTTTGGTGGAGCTTTTCCTAGCAGATGTGGAAGGATTATCAGTCCTGCGGTCCTTTAGATTGCTGCGA
GTCTTCAAGTTGGCAAAATCCTGGCCCACACTGAATATGCTCATTAAGATCATCGGCAACTCGGTGGGCG
CACTGGGCAACCTGACCCTGGTGCTGGCCATCATCGTCTTCATTTTTGCCGTGGTCGGCATGCAGCTGTT
TGGAAAGAGCTACAAGGAGTGTGTTTGCAAGATCAACGAGAACTGCAAGCTCCCACGCTGGCACATGAAC
GACTTCTTCCACTCCTTCCTGATCGTGTTCCGTGTGCTGTGTGGGGAGTGGATAGAGACCATGTGGGACT
GCATGGAGGTTGCGGGCCAGACCATGTGCCTTATTGTTTACATGATGGTCATGGTGATTGGGAACCTTGT
GGTCCTGAACCTGTTTCTGGCTTTATTACTGAGTTCCTTTAGTTCTGACAATCTTACAGCAATTGAAGAA
GACACCGACGCAAACAACCTCCAGATTGCAGTGGCCAGAATTAAAAGAGGGATCAATTATGTGAAACAGA
CCCTGCGTGAATTCATTCTAAAGTCATTTTCCAAAAAGCCAAAGGGCTCCAAGGACACAAAACGAACAGC
GGATCCCAACAACAAAAGAGAAAACTATATCTCAAACCGTACCCTTGCGGAGATAAGCAAAGATCACAAT
TTCCTCAAAGAAAAGGATAAGATCAGTGGTTTTAGCAGCAGTCTAGACAAAAGCTTTATGGATGAAAACG
ATTACCAGTCCTTTATTCATAATCCCAGCCTCACAGTGACAGTGCCCATTGCACCTGGGGAGTCTGATTT
GGAGAATATGAACACAGAAGAGCTTAGCAGTGACTCAGATAGTGACTACAGCAAAGAGAGACGGAACCGA
TCAAGTTCTTCAGAGTGCAGCACAGTTGATAACCCTCTGCCAGGAGAAGAGGAGGCAGAAGCTGAGCCTA
TCAATGCAGATGAGCCCGAAGCCTGTTTTACAGATGGCTGTGTGAGGAGATTTCCATGCTGCCAAGTTAA
CATAGACTCCGGGAAAGGGAAAGTTTGGTGGACCATCCGGAAGACCTGCTACAGGATAGTGGAGCACAGC
TGGTTTGAAAGCTTCATTGTTCTCATGATCCTGCTCAGCAGTGGAGCTCTGGCTTTTGAGGATATATATA
TTGAAAAGAAAAAGACCATTAAGATTATCCTGGAGTATGCTGACAAGATATTCACCTACATCTTCATTCT
GGAAATGCTTCTAAAATGGGTGGCATACGGGTATAAAACATATTTCACTAATGCCTGGTGTTGGCTGGAC
TTCTTAATTGTTGATGTGTCTCTAGTTACTTTAGTAGCCAACACTCTTGGCTACTCAGACCTTGGCCCCA
TTAAATCTCTACGGACACTGAGGGCCCTAAGACCCCTAAGAGCTTTGTCTAGATTTGAAGGAATGAGGGT
AGTGGTCAACGCACTCATAGGAGCAATCCCTTCCATCATGAATGTGCTTCTTGTGTGCCTTATATTCTGG
CTAATATTTAGCATCATGGGAGTCAATCTGTTTGCTGGCAAGTTCTATGAGTGTGTTAACACCACAGATG
GCTCACGATTTTCTGTATCTCAAGTTGCAAACCGTTCTGAGTGTTTTGCCCTGATGAATGTTAGTGGAAA
TGTGCGATGGAAAAACCTGAAAGTAAACTTCGATAACGTTGGACTTGGTTACCTGTCGCTGCTTCAAGTT
GCAACGTTCAAGGGCTGGATGGATATTATGTATGCAGCAGTTGACTCTGTTAATGTAAATGCACAACCAA
TATATGAATACAACCTCTACATGTACATTTATTTTGTCATCTTCATCATCTTTGGCTCATTCTTCACTTT
GAACTTGTTCATTGGTGTCATCATCGATAATTTCAACCAACAGAAGAAGAAGCTTGGAGGTCAAGATATC
TTTATGACAGAAGAACAGAAGAAATACTATAATGCAATGAAGAAGCTGGGGTCCAAGAAACCACAAAAAC
CAATTCCGAGGCCAGGGAACAAATTCCAAGGATGCATATTTGACTTAGTGACAAACCAAGCTTTTGATAT
CACCATCATGGTTCTTATCTGCCTCAATATGGTAACCATGATGGTAGAAAAAGAGGGGCAAACTGACTAC
ATGAGTTTTGTGCTATACTGGATCAACGTGGTCTTCATCATCCTGTTCACTGGGGAGTGTGTGCTGAAGC
TGATCTCTCTCAGGCATTACTACTTCACTGTGGGATGGAACATTTTTGATTTTGTGGTAGTGATCCTCTC
CATTGTAGGAATGTTTCTCGCTGAGATGATAGAGAAGTATTTCGTGTCTCCTACCCTGTTCCGAGTCATT
CGCCTGGCCAGGATTGGACGAATCCTACGCCTGATCAAAGGCGCCAAGGGGATCCGCACGCTGCTCTTTG
CTCTGATGATGTCCCTTCCTGCGCTGTTCAACATCGGCCTCCTGCTTTTCCTCGTCATGTTCATCTACGC
CATCTTTGGGATGTCCAACTTTGCCTACGTTAAAAAGGAAGCTGGAATTAATGACATGTTCAACTTTGAG
ACCTTCGGCAACAGCATGATCTGCCTGTTCCAAATCACCACCTCTGCGGGCTGGGATGGACTGCTGGCCC
CCATCCTCAACAGTGCACCTCCTGACTGTGACCCAAAAAAGGTTCACCCAGGAAGTTCAGTGGAAGGGGA
CTGTGGAAATCCATCTGTGGGAATTTTCTACTTTGTCAGCTACATCATCATATCCTTCCTGGTTGTGGTG
AACATGTACATTGCTGTCATCCTGGAGAACTTCAGCGTTGCCACAGAAGAAAGTACTGAGCCCCTGAGTG
AGGACGACTTTGAGATGTTCTACGAAGTCTGGGAGAAGTTCGACCCTGACGCCACCCAGTTCATAGAGTT
CTGCAAGCTCTCTGACTTTGCAGCAGCCCTGGATCCTCCCCTCCTCATCGCAAAGCCAAACAAAGTCCAG
CTCATTGCCATGGACCTGCCCATGGTGAGTGGAGACCGCATCCACTGCCTGGACATCTTATTTGCTTTTA
CAAAGCGGGTCCTGGGCGAGAGCGGAGAGATGGATTCCCTTCGTTCACAGATGGAAGAAAGGTTTATGTC
AGCCAATCCTTCTAAAGTGTCCTATGAGCCCATCACAACCACACTGAAGCGAAAACAAGAGGATGTATCT
GCGACTATCATTCAGCGTGCTTACAGACGGTACCGCCTTAGGCAAAACGTCAAGAATATATCAAGTATAT
ATATAAAAGATGGAGACAGAGATGACGATTTGCCCAATAAAGAAGATATAGTTTTTGATAATGTTAACGA
GAACTCAAGTCCAGAAAAGACAGATGCAACAGCCTCTACCATCTCTCCACCTTCCTATGACAGTGTCACA
AAGCCAGATCAAGAGAAATATGAAACAGACAAAACGGAGAAGGAAGACAAAGAGAAAGACGAAAGCAGGA
AATAG

Translation (1984 aa):
MAMLPPPGPQSFVHFTKQSLALIEQRISEEKAKGHKDEKKDDEEEGPKPSSDLEAGKQLPFIYGDIPPGM
VSEPLEDLDPYYADKKTFIVLNKGKAIFRFNATPALYMLSPFSPLRRISIKILVHSLFSMLIMCTILTNC
IFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVNLGNV
SALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKDL
EQNETLESIMSTAESEEELKRYFYYLEGSKDALLCGFSTDSGQCPEGYECVTAGRNPDYGYTSFDTFGWA
FLALFRLMTQDYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAAAAAEYTSLGRSRIMGLSESSSETSRLSSKSAKERRNRRKKKKQKLSSG
EEKGDDEKLSKSGSEESIRKKSFHLGVEGHHRAREKRLSTPNQSPLSIRGSLFSARRSSRTSLFSFKGRG
RDLGSETEFADDEHSIFGDNESRRGSLFVPHRPRERRSSNISQASRSPPVLPVNGKMHSAVDCNGVVSLV
DGPSALMLPNGQLLPEVIIDKATSDDSGTTNQMRKKRLSSSYFLSEDMLNDPHLRQRAMSRASILTNTVE
ELEESRQKCPPWWYRFAHTFLIWNCSPYWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTDE
FKNVLAVGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLR
VFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINENCKLPRWHMN
DFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVYMMVMVIGNLVVLNLFLALLLSSFSSDNLTAIEE
DTDANNLQIAVARIKRGINYVKQTLREFILKSFSKKPKGSKDTKRTADPNNKRENYISNRTLAEISKDHN
FLKEKDKISGFSSSLDKSFMDENDYQSFIHNPSLTVTVPIAPGESDLENMNTEELSSDSDSDYSKERRNR
SSSSECSTVDNPLPGEEEAEAEPINADEPEACFTDGCVRRFPCCQVNIDSGKGKVWWTIRKTCYRIVEHS
WFESFIVLMILLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLD
FLIVDVSLVTLVANTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFW
LIFSIMGVNLFAGKFYECVNTTDGSRFSVSQVANRSECFALMNVSGNVRWKNLKVNFDNVGLGYLSLLQV
ATFKGWMDIMYAAVDSVNVNAQPIYEYNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDI
FMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQTDY
MSFVLYWINVVFIILFTGECVLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVI
RLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFE
TFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKVHPGSSVEGDCGNPSVGIFYFVSYIIISFLVVV
NMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQ
LIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVS
ATIIQRAYRRYRLRQNVKNISSIYIKDGDRDDDLPNKEDIVFDNVNENSSPEKTDATASTISPPSYDSVT
KPDQEKYETDKTEKEDKEKDESRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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