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Report for CCDS27373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27373.1 Public Mus musculus 15 Slc1a3 23 108 98 CCDS HistoryNCBI Gene:20512Re-query CCDS DB by CCDS ID:27373.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005493.13 ENSMUSP00000005493.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005493.13Link to Ensembl Protein Viewer:ENSMUSP00000005493.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000005493Re-query CCDS DB by Protein ID:ENSMUSP00000005493
Original member Current member NCBI NM_148938.3 NP_683740.1 Accepted alive Link to Nucleotide Sequence:NM_148938.3Link to Protein Sequence:NP_683740.1Re-query CCDS DB by Nucleotide ID:NM_148938Re-query CCDS DB by Protein ID:NP_683740Link to BLAST:NP_683740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683740.1 543 P56564 543 100% 0 0

Chromosomal Locations for CCDS 27373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 8636132 8636339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8639056 8639190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8642182 8642376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8642900 8643133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8645660 8645952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8649543 8649585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8650849 8651053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8688288 8688425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 8708562 8708742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGACCAAAAGCAACGGAGAAGAGCCTAGGATGGGGGGCAGGATGGAGAGATTGCAGCAAGGGGTCCGCA
AGCGGACACTTCTGGCCAAGAAGAAAGTTCAGAGCCTCACCAAGGAAGATGTTAAGAGTTACCTGTTTCG
GAATGCCTTCGTTCTGCTCACGGTCACTGCTGTCATTGTGGGTACAATCCTTGGATTTGCCCTCCGACCG
TATAAAATGAGCTACCGGGAGGTGAAGTACTTTTCGTTCCCTGGGGAGCTTCTCATGAGGATGCTGCAGA
TGCTGGTCTTGCCCCTGATCATCTCCAGTCTCGTCACAGGAATGGCGGCCCTAGATAGTAAGGCATCCGG
GAAGATGGGGATGCGCGCTGTAGTCTATTACATGACTACTACCATCATTGCTGTGGTGATTGGCATAATC
ATTGTCATCATCATCCACCCCGGAAAGGGCACAAAGGAAAACATGTACAGAGAAGGTAAAATCGTGCAGG
TCACTGCAGCAGATGCCTTCCTGGATTTGATCAGGAACATGTTCCCTCCCAATCTGGTAGAAGCCTGCTT
TAAACAGTTTAAAACCAGCTACGAGAAAAGAAGCTTTAAAGTGCCTATCCAGTCCAACGAAACACTTCTG
GGCGCCGTGATCAACAACGTGTCAGAGGCCATGGAGACTCTGACCCGGATCCGGGAGGAGATGGTGCCCG
TGCCTGGATCTGTGAATGGGGTCAATGCCCTGGGCCTAGTTGTCTTCTCCATGTGCTTCGGTTTCGTGAT
CGGAAACATGAAGGAGCAGGGGCAAGCGCTGAGAGAGTTCTTTGATTCTCTTAACGAAGCCATCATGCGA
TTGGTCGCGGTGATAATGTGGTATGCGCCTCTGGGCATCCTCTTCTTGATCGCAGGGAAGATTGTTGAGA
TGGAAGACATGGGTGTGATTGGGGGACAGCTTGCCATGTACACCGTGACAGTCATTGTCGGCCTCCTCAT
TCACGCCGTCATCGTCCTGCCTCTCCTCTACTTCCTGGTAACCCGGAAGAACCCCTGGGTTTTCATTGGA
GGGTTGCTGCAAGCGCTCATCACAGCCCTTGGGACCTCCTCAAGTTCTGCCACCCTACCCATCACTTTCA
AGTGCCTGGAAGAGAACAATGGTGTGGACAAACGCATCACCAGATTTGTGCTCCCCGTGGGGGCCACCAT
TAACATGGATGGGACCGCCCTCTACGAGGCTTTGGCTGCCATTTTCATCGCTCAAGTGAACAACTTTGAC
CTGAACTTTGGACAGATTATAACAATAAGCATCACAGCCACGGCCGCAAGCATCGGGGCAGCCGGGATTC
CTCAGGCCGGTCTGGTCACCATGGTCATCGTGCTGACATCTGTGGGCCTGCCCACAGATGACATCACACT
CATCATTGCAGTGGACTGGTTTCTGGACCGCCTCCGAACCACCACCAACGTACTGGGTGACTCCCTCGGA
GCAGGGATTGTCGAGCACTTGTCCCGACATGAACTGAAGAACCGAGATGTTGAAATGGGGAACTCGGTGA
TTGAGGAGAACGAAATGAAGAAGCCGTATCAGCTGATTGCCCAGGACAATGAACCGGAGAAACCCGTGGC
AGACAGCGAAACCAAGATGTAG

Translation (543 aa):
MTKSNGEEPRMGGRMERLQQGVRKRTLLAKKKVQSLTKEDVKSYLFRNAFVLLTVTAVIVGTILGFALRP
YKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTIIAVVIGII
IVIIIHPGKGTKENMYREGKIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTSYEKRSFKVPIQSNETLL
GAVINNVSEAMETLTRIREEMVPVPGSVNGVNALGLVVFSMCFGFVIGNMKEQGQALREFFDSLNEAIMR
LVAVIMWYAPLGILFLIAGKIVEMEDMGVIGGQLAMYTVTVIVGLLIHAVIVLPLLYFLVTRKNPWVFIG
GLLQALITALGTSSSSATLPITFKCLEENNGVDKRITRFVLPVGATINMDGTALYEALAAIFIAQVNNFD
LNFGQIITISITATAASIGAAGIPQAGLVTMVIVLTSVGLPTDDITLIIAVDWFLDRLRTTTNVLGDSLG
AGIVEHLSRHELKNRDVEMGNSVIEENEMKKPYQLIAQDNEPEKPVADSETKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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