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Report for CCDS28393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28393.1 Public Mus musculus 17 Slc22a1 23 108 98 CCDS HistoryNCBI Gene:20517Re-query CCDS DB by CCDS ID:28393.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024596.9 ENSMUSP00000024596.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024596.9Link to Ensembl Protein Viewer:ENSMUSP00000024596.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024596Re-query CCDS DB by Protein ID:ENSMUSP00000024596
Original member Current member NCBI NM_009202.5 NP_033228.2 Accepted alive Link to Nucleotide Sequence:NM_009202.5Link to Protein Sequence:NP_033228.2Re-query CCDS DB by Nucleotide ID:NM_009202Re-query CCDS DB by Protein ID:NP_033228Link to BLAST:NP_033228.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033228.2 556 O08966 556 100% 0 0

Chromosomal Locations for CCDS 28393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12649018 12649084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12650869 12650971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12652372 12652484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12656938 12657046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12659546 12659760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12662537 12662643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12662764 12662878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12664390 12664558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12666625 12666779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12667227 12667330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12675246 12675659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGCCCACCGTGGACGATGTCCTGGAGCACGTTGGAGAGTTTGGCTGGTTCCAGAAGCAAGCCTTCCTGT
TGCTATGCCTGATCTCAGCTTCTTTAGCTCCCATCTACGTGGGCATCGTTTTCCTGGGCTTCACCCCCGA
CCACCACTGCCGGAGTCCTGGAGTGGCCGAGCTGAGCCAGCGGTGTGGCTGGAGCCCGGCAGAGGAGCTG
AACTACACCGTGCCGGGCCTGGGGTCTGCGGGTGAGGCCTCCTTCCTCAGCCAATGCATGAAGTATGAGG
TGGACTGGAACCAGAGCACCCTTGACTGTGTGGACCCACTGTCCAGCCTGGCTGCCAACAGGAGCCACTT
GCCACTGAGCCCCTGCGAGCATGGCTGGGTGTACGACACTCCCGGCTCCTCCATCGTCACTGAGTTTAAC
CTGGTGTGTGGAGACGCCTGGAAAGTGGACCTTTTTCAGTCCTGTGTGAACTTGGGCTTCTTCCTGGGCT
CCCTGGTTGTGGGTTACATTGCAGACAGGTTTGGCCGTAAGCTCTGCCTCCTGGTGACCACTCTGGTCAC
CTCCCTGTCTGGCGTGTTAACAGCGGTGGCCCCAGACTATACATCCATGTTGCTCTTTCGCCTTCTGCAA
GGCATGGTCAGCAAAGGCAGCTGGGTGTCTGGCTACACCTTGATCACAGAGTTTGTCGGCTCTGGCTACA
GGAGAACGACAGCCATCTTGTACCAGGTGGCCTTCACAGTGGGGCTAGTGGGGCTTGCTGGGGTGGCCTA
TGCCATTCCAGACTGGCGCTGGCTCCAGCTGGCGGTGTCCCTGCCCACCTTCCTCTTCCTGCTGTATTAC
TGGTTTGTCCCAGAATCCCCCCGGTGGCTGTTGTCTCAGAAGAGAACCACTCAAGCGGTAAGGATAATGG
AGCAAATTGCACAGAAGAACAGGAAGGTGCCCCCTGCTGACCTGAAGATGATGTGCCTTGAGGAAGATGC
CTCAGAGAGGCGGAGTCCTTCGTTTGCAGACCTGTTCCGCACCCCCAGCCTGAGGAAGCACACCCTCATC
CTGATGTATCTATGGTTCTCTTGTGCTGTGCTGTACCAGGGCCTCATCATGCATGTGGGAGCCACAGGGG
CCAACCTCTACCTGGACTTCTTTTATTCTTCTCTAGTGGAATTCCCTGCGGCCTTTATCATCCTTGTCAC
CATTGACCGCATTGGCCGCATCTACCCAATAGCGGCATCAAATCTGGTGGCGGGGGCAGCCTGCCTCCTC
ATGATCTTTATCCCACATGAGCTGCATTGGTTGAATGTGACCCTCGCTTGTCTTGGCCGTATGGGAGCCA
CCATTGTGTTGCAGATGGTCTGCCTAGTGAACGCTGAGCTGTACCCTACATTCATCAGGAATCTCGGGAT
GATGGTGTGCTCTGCCCTGTGTGACCTAGGTGGGATCTTCACCCCCTTCATGGTGTTCAGGCTGATGGAA
GTTTGGCAAGCCCTGCCCCTCATTTTGTTTGGGGTTTTGGGCCTGAGTGCTGGGGCTGTGACCCTTCTAC
TTCCGGAGACCAAGGGCGTGGCTCTGCCTGAGACTATTGAAGAAGCGGAGAACCTGGGAAGGAGGAAATC
AAAGGCCAAAGAAAACACGATTTACCTTCAGGTCCAAACAGGCAAATCCCCACATACCTGA

Translation (556 aa):
MPTVDDVLEHVGEFGWFQKQAFLLLCLISASLAPIYVGIVFLGFTPDHHCRSPGVAELSQRCGWSPAEEL
NYTVPGLGSAGEASFLSQCMKYEVDWNQSTLDCVDPLSSLAANRSHLPLSPCEHGWVYDTPGSSIVTEFN
LVCGDAWKVDLFQSCVNLGFFLGSLVVGYIADRFGRKLCLLVTTLVTSLSGVLTAVAPDYTSMLLFRLLQ
GMVSKGSWVSGYTLITEFVGSGYRRTTAILYQVAFTVGLVGLAGVAYAIPDWRWLQLAVSLPTFLFLLYY
WFVPESPRWLLSQKRTTQAVRIMEQIAQKNRKVPPADLKMMCLEEDASERRSPSFADLFRTPSLRKHTLI
LMYLWFSCAVLYQGLIMHVGATGANLYLDFFYSSLVEFPAAFIILVTIDRIGRIYPIAASNLVAGAACLL
MIFIPHELHWLNVTLACLGRMGATIVLQMVCLVNAELYPTFIRNLGMMVCSALCDLGGIFTPFMVFRLME
VWQALPLILFGVLGLSAGAVTLLLPETKGVALPETIEEAENLGRRKSKAKENTIYLQVQTGKSPHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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