NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20201.1 Public Mus musculus 6 Snca 23 108 98 CCDS HistoryNCBI Gene:20617Re-query CCDS DB by CCDS ID:20201.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20201.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114268.4 ENSMUSP00000109907.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114268.4Link to Ensembl Protein Viewer:ENSMUSP00000109907.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114268Re-query CCDS DB by Protein ID:ENSMUSP00000109907
Original member Current member EBI ENSMUST00000163779.7 ENSMUSP00000126067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163779.7Link to Ensembl Protein Viewer:ENSMUSP00000126067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163779Re-query CCDS DB by Protein ID:ENSMUSP00000126067
Original member Current member NCBI NM_001042451.2 NP_001035916.1 Accepted alive Link to Nucleotide Sequence:NM_001042451.2Link to Protein Sequence:NP_001035916.1Re-query CCDS DB by Nucleotide ID:NM_001042451Re-query CCDS DB by Protein ID:NP_001035916Link to BLAST:NP_001035916.1
Original member Current member NCBI NM_009221.2 NP_033247.1 Accepted alive Link to Nucleotide Sequence:NM_009221.2Link to Protein Sequence:NP_033247.1Re-query CCDS DB by Nucleotide ID:NM_009221Re-query CCDS DB by Protein ID:NP_033247Link to BLAST:NP_033247.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035916.1 140 O55042-1 140 100% 0 0
NP_033247.1 140 O55042-1 140 100% 0 0

Chromosomal Locations for CCDS 20201.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 60732129 60732161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60733104 60733187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60815617 60815759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60818324 60818365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 60827481 60827601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGATGTGTTCATGAAAGGACTTTCAAAGGCCAAGGAGGGAGTTGTGGCTGCTGCTGAGAAAACCAAGC
AGGGTGTGGCAGAGGCAGCTGGAAAGACAAAAGAGGGAGTCCTCTATGTAGGTTCCAAAACTAAGGAAGG
AGTGGTTCATGGAGTGACAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTG
GTGACTGGTGTGACAGCAGTCGCTCAGAAGACAGTGGAGGGAGCTGGGAATATAGCTGCTGCCACTGGCT
TTGTCAAGAAGGACCAGATGGGCAAGGGTGAGGAGGGGTACCCACAGGAAGGAATCCTGGAAGACATGCC
TGTGGATCCTGGCAGTGAGGCTTATGAAATGCCTTCAGAGGAAGGCTACCAAGACTATGAGCCTGAAGCC
TAA

Translation (140 aa):
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGGAV
VTGVTAVAQKTVEGAGNIAAATGFVKKDQMGKGEEGYPQEGILEDMPVDPGSEAYEMPSEEGYQDYEPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH