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Report for CCDS21880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21880.1 Public Mus musculus 7 Stx4a 23 108 98 CCDS HistoryNCBI Gene:20909Re-query CCDS DB by CCDS ID:21880.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033075.13 ENSMUSP00000033075.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033075.13Link to Ensembl Protein Viewer:ENSMUSP00000033075.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033075Re-query CCDS DB by Protein ID:ENSMUSP00000033075
Original member Current member EBI ENSMUST00000121705.7 ENSMUSP00000112927.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121705.7Link to Ensembl Protein Viewer:ENSMUSP00000112927.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121705Re-query CCDS DB by Protein ID:ENSMUSP00000112927
Original member NCBI NM_009294.3 NP_033320.1 Updated not alive Link to Nucleotide Sequence:NM_009294.3Link to Protein Sequence:NP_033320.1Re-query CCDS DB by Nucleotide ID:NM_009294Re-query CCDS DB by Protein ID:NP_033320
Current member NCBI NM_009294.4 NP_033320.1 Accepted alive Link to Nucleotide Sequence:NM_009294.4Link to Protein Sequence:NP_033320.1Re-query CCDS DB by Nucleotide ID:NM_009294Re-query CCDS DB by Protein ID:NP_033320Link to BLAST:NP_033320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033320.1 298 P70452 298 100% 0 0

Chromosomal Locations for CCDS 21880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127842039 127842068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127842264 127842365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127842445 127842544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127842684 127842758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127843572 127843642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127846020 127846128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127846200 127846276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127846488 127846625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127848388 127848498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127848569 127848652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGCGCGACAGGACCCACGAGTTGAGGCAGGGGGATAACATCTCAGACGATGAAGATGAGGTTCGAGTCG
CGCTGGTGGTGCACTCAGGTGCTGCCCGGTTGGGCAGCCCGGACGACGAGTTCTTCCAGAAGGTGCAGAC
AATTCGGCAGACTATGGCCAAACTGGAGAGTAAAGTCCGGGAGTTGGAGAAACAGCAGGTCACCATCCTG
GCCACGCCTCTTCCCGAGGAGAGCATGAAGCAGGGCCTGCAGAACCTGCGAGAGGAGATCAAACAGCTGG
GGAGAGAGGTCCGGGCGCAGCTAAAAGCCATAGAGCCCCAGAAGGAGGAAGCTGATGAGAATTACAACTC
AGTCAACACAAGGATGAAGAAAACCCAGCATGGAGTCCTGTCCCAGCAATTTGTCGAGCTCATCAACAAG
TGCAACTCAATGCAGTCCGAATACCGAGAGAAGAATGTGGAGCGGATCCGGAGGCAGCTGAAGATCACCA
ATGCTGGAATGGTGTCTGACGAGGAGCTGGAACAGATGCTGGACAGTGGGCAGAGTGAGGTGTTTGTGTC
TAATATCCTGAAGGACACGCAGGTGACTCGGCAGGCCCTGAATGAGATCTCTGCGCGGCACAGTGAGATC
CAGCAGTTGGAGCGCAGTATCCGAGAGCTCCATGAGATCTTTACGTTTCTAGCTACGGAGGTGGAGATGC
AGGGGGAGATGATCAACCGCATCGAGAAGAACATCCTGAGCTCGGCCGACTACGTGGAACGTGGGCAAGA
GCACGTCAAGATAGCCCTAGAGAATCAGAAGAAGGCGAGGAAGAAAAAAGTCATGATTGCCATCTGTGTC
TCTGTCACTGTTCTCATCTTGGCTGTCATCATTGGCATCACCATAACCGTTGGATAA

Translation (298 aa):
MRDRTHELRQGDNISDDEDEVRVALVVHSGAARLGSPDDEFFQKVQTIRQTMAKLESKVRELEKQQVTIL
ATPLPEESMKQGLQNLREEIKQLGREVRAQLKAIEPQKEEADENYNSVNTRMKKTQHGVLSQQFVELINK
CNSMQSEYREKNVERIRRQLKITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTRQALNEISARHSEI
QQLERSIRELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKIALENQKKARKKKVMIAICV
SVTVLILAVIIGITITVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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