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Report for CCDS29961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29961.1 Public Mus musculus X Ccnb3 23 108 98 CCDS HistoryNCBI Gene:209091Re-query CCDS DB by CCDS ID:29961.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056725.7 ENSMUSP00000052272.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056725.7Link to Ensembl Protein Viewer:ENSMUSP00000052272.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056725Re-query CCDS DB by Protein ID:ENSMUSP00000052272
Original member Current member EBI ENSMUST00000115752.7 ENSMUSP00000111418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115752.7Link to Ensembl Protein Viewer:ENSMUSP00000111418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115752Re-query CCDS DB by Protein ID:ENSMUSP00000111418
Original member NCBI NM_183015.3 NP_898836.2 Updated not alive Link to Nucleotide Sequence:NM_183015.3Link to Protein Sequence:NP_898836.2Re-query CCDS DB by Nucleotide ID:NM_183015Re-query CCDS DB by Protein ID:NP_898836
Current member NCBI NM_183015.4 NP_898836.2 Accepted alive Link to Nucleotide Sequence:NM_183015.4Link to Protein Sequence:NP_898836.2Re-query CCDS DB by Nucleotide ID:NM_183015Re-query CCDS DB by Protein ID:NP_898836Link to BLAST:NP_898836.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898836.2 1396 Q810T2-1 1396 99.9284% 0 1

Chromosomal Locations for CCDS 29961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 6979886 6979967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6980251 6980381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6985416 6985565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6986270 6986425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6990399 6990536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6995511 6995603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7005234 7005347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7007012 7009720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7009818 7010136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7020022 7020134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7025603 7025692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7030791 7030886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4191 nt):
ATGCCACCACCACTACTACCCAAAAGATCCAAACTGGAGACTGAGAAGGCTCAGTCTAACAAGATCACAC
CT
AGAGAGGAGCAGCAATCTGAAAAGATTGGAAAGAGTAACCATGCAGCATCTTCATCTTCATCTTCAAC
T
CAAGGCGCAGTAAAGAGGAGATCAGTGTTTGAAGATGTAACTAATGCATCTCATAGTCAATGTGTCCAG
TCA
AAGGAAGACAATATAGAGCTTAAAAGCCATGTTTCCAAAAGGACAAAGAAGGGAGTTGGTGAAGTTA
CT
CAGAAAAAAATAAAAAGTTCTAAGATGGGGCATGTTACTTCACTGTCAAACATGGAGAAAGAGTTTAT
T
CTGGATATACCCAACAAGCCTAAAACACTAACTACTGAGGAACCATCTGTCTTTCAAAAGACATTAGTT
TTA
AATGAGGAGCCTGCTACTAAAGAGACATGCCTTATGAGGAAGACATTAAAGAGTTGTGCATTTCATC
AG
GAGACACTTCTAATGGAGAAGCCACTAACCTTGCTGGTGGAGACTGAAGATTACAATGAGTTTGATAC
A
GAACTGATGACTTCTAAAAAGAAGGATAAACCTGAAGATCCAACCATCATTGAGGAGATGACTGATTTG
AAG
AAGTCTGTTATTAGGAAGGTGACGCTCACCTCAAGCCCATTATGGTTAAAGAATAAACATGTTGTTC
AA
GAAGAGAAACCTGTGATTCAGGAGAAGAGTTCATTCAAGAAGATATCATTAGTATCAAATGTGGTGAC
T
ACTAAAGAGAAGCCACCAGTCAAAAAGCCACATTTCAGGAAAAAAAAGCCTACCACTGAGATGAAGTCT
TTG
TTACAGGAGCCATCACTGGAAGAGAAATATAATACTCAAGAAGATGCAAGCATCTTGAAGAAGCCAC
AG
GTGTTACAAGAGAATACAAATAACAAAGATGCTACTTTAACAGAGCCAGTTACTTTTAAAGGGAAACA
T
AGTGCCAATGAAGCAACCCATACAAAGAAGCCATCCTCTTCTAAAAATAATCCTGACCCTCAGGGAAAA
GGC
ACTAATTTGAGGCCACTAAGAGTTCATCCAGTCACCTATGAAAATGAGCCAATGTCCTCTAAGAAGT
CA
ACTACTAAGAAGAAAGATTCCCATTTCCATGGGCCATCTGTACTGCCAGACAAGCATAGCCCTCAAAT
G
GAGGTGTCCACTGTGAAAAAATCCCTGGCTCTGCCAAATCCTACCACTGAGGAGAAGATGTTACATTTT
CCA
GTAGCTACAGTTTTGGAGAAGCAGCATAACATGGGCGAGGCCCCTTGCCTGAAGAAGCCCTCACCTT
TA
AGGAAGCAGCAGCAGCTCCCTAAAAGAAGACGTTTCTTCAGTAACTCTGCAGTACAAGAAACAGTCAT
T
CGCAAGCCATTGTTCTTTAAGATGTCTACCACTGAGAAAGATCCCCCTTCCCAGTGGCCATCTGCACTG
CCA
AAGAAGCATATCAGTCCTGGGGAATTGTCCAAACAGAAGAAGCAGCATGTCTCACCAAAGCATAACA
TG
GAGGAGGACTCACAGTGTTGGTTAGATTCAGCTTTTAAGAAACAGCTCAGCAGGGAGGAGCCAGCCTC
C
ACCCATACGCCTTTAAAGTTAGAGATGCAGCAGGCTATTACTAAAGAGACAGGGTTCCATTTGAGAAAC
CCA
CTAGTATTACCAACAGTCACTTCAGAAGCAAAGTCACTGACTAAGGAGCCTCCATCCTTTAGGGAAC
AA
AATACATCTTTACTGAAAAGAAAGAGTACTACTCACACAATAACCTTACAGCAAGCACAGTCAGAGTG
G
CAGGAAATGACAGATGAAGACAGAAATTTGTTTTCTATAAAGCCTGGATCACATAGGAAGGAACCTATA
CCT
GAGTTCCTTCAGAATCCATTGCCACCAAATGAAAATTGCTTAATTTCACAAAAACTATCCCACTCAA
TG
CCATTTGCCTCACAGAAGACCACCAGTCAAGAAAGAGCACATAGGAAGGAATCGGTGGCTTCAAATGA
T
GACAAGAACTTCTTCTCGCAGGACCTATTTTCTCCTTTCAGTTCTGCTGATGAAGATACATTGAAATTC
CAT
AAGTCTTTGGACTTTCAAGAGCAGGTTGATAGAAAAAATGACTCCCACAAAAAAATGTTTGACTCCC
AG
GACAGTGTTTCCGAAGAAGAGTCCTTTTTAAGAAAGCTATTTTGTAAGGACAGATGCTCCTCTACTGA
A
GAATTAAGCCAAGAGAGGACTGTTGCTCTGGAACAGGAATTCCTCTTAATAAAAATATTGAATGAGAAT
ACC
AGTAGTGATGTTGATGAGCCTCTTAGTCATCAGTCACCTCATATTCAGAACCATTCTGACACTACGA
AG
GAGGCCTTGGAGGCCTCAGAAGCCTTGGAGGCCCCAGAAGCCTTGGAGACCTTAGAAGCCTTGGTGGC
C
TCAGAAGACTTGGAGGAACCTCTAAACATTTTAGAAGAACTCAGCACTGAGAATATGGTTGCCCTCATG
AAG
ATGTTGGTCACAGAAGATGAGTCTACTAAGGATTCTTTTAGCGGGAATTACACTGCTGCCAGGGAAG
CT
CATGCTGAGAAATCCTTGTCCTTGGAAGAGACCAGCATCAATGAAGCGGCAACTTTGAAGGAGTCCTT
A
TCTTCACAGGAGAAGCACAGAGCTGAGCTGGTGACTGTTCTGAAGGAGCTACTTGTTTTAATGAAGAAT
CCC
AGTCTGAAGAGGGTGGCCTTAGCGTTTCAGGAGAATCCATCTAATAACGTAGAGACTCTCTTGAGGG
AA
GTATTGGCATTGGTGGAGAACTCTACAGCTGACGAATCTACTCTGCAGGAGAAACCTAGCACTAAAAC
A
GATGTTACCCCAAAGGAACTATTGGCCTTGGAAGAGAATTCCAGCAATAAAAAGGCAAACCCCATGGAC
TCT
TTATCCTTTGATCATAAGCCTGACACTGAGATGGGTGAAATAGCCAGAATGGTATTAACTGATGAAG
AG
TACAACATAGATACCCTGTATGAGAGAGTATTAGCACTGAGTCAGGGACTCATTGCTGCAGACCAGTT
G
TCCTTTACAGATCTACAGAATTTTGAAGAGACTAAAATTGTTGATGAAGAGGAATTTTTCAAATCATTC
CTT
GTCTTTGAAAATAAGAATAGCCCTAATATGTCCAGCAATGCTTTTGAATCCAGAACAGACAATTCCA
GT
GCTATCATGCCAAGTTCAAAGGCATTCAATCCTGTCGAGAACTCCAACCCATATGTGTCTAGTTCCAA
A
AGCTTTAAGTCAACTCTGGGTGCAAAAGAAACTGAGATAACCATACAGGATGACAGTGACAGCCTGGAA
AGA
ATTGAAAAGGAAGGCCAAGATCCATTATTGAACACTATATATGCCAAAGACGTCTTCAATTACTTGA
AA
GAAAGAGAGGAAAAGTTCCTAGTTCAGAAATACATGGATGGGCAGATGGAACTCACCAGTGATATGAG
A
GCCATTCTTGTGGACTGGTTGGTGGAGATACAGGGATCCTTTCAGATGACCCATGAGACCCTGTATTTG
GCA
GTGAAGATAATGGATCTCTACCTAATGAAGGCACAATGCAAGAAGAATCATCTACAACTCCTTGGTT
CC
ACTACTTACATGATTGCAGCCAAATTTGAGGAATCCTATCCCCCTTCTCTGTCAGAGTTCCTGTTCAT
T
TGTGAAGATATGTATGAAAAGAGTGATATGGTATCTTTGGAAAGCAGCATCCTGCAAACTCTCAACTTT
GAC
ATCAATATTCCCACAGCATATAATTTTCTGCGTAGATATGCTTCGTGCATCCATGCTAGCATGAAGA
CA
CTAACCTTATCCCGCTTCATCTGTGAGATGACCCTGCAAGAATATGAGTATATTGAAGAGAGGCCTTC
A
AAGCTAGCTGCAGCCTCTTTCATCTTGGCCCTCTATATGAGGAATCTCAGCAATTGTGTTCCTACACTG
GAA
TATTTCACTGGGTACAAGATGGCAGAACTCCATATCTTGGTCAGGAAGTTAAACCATTTGCTGAACT
TC
CGATCCCATAGTATCCTCAAGAATGTGTTTGAGAAGTATTCTGAAGAGACCTACTTTGAAGTCGCCAA
A
ATCCCTCCTTTGAGCAAGCAAGATCTAGAGAATCTTTTGAATTGTGCATTATTCCACTGA


Translation (1396 aa):
MPPPLLPKRSKLETEKAQSNKITPREEQQSEKIGKSNHAASSSSSSTQGAVKRRSVFEDVTNASHSQCVQ
S
KEDNIELKSHVSKRTKKGVGEVTQKKIK
SSKMGHVTSLSNMEKEFILDIPNKPKTLTTEEPSVFQKTLV
L
NEEPATKETCLMRKTLKSCAFHQETLLMEKPLTLLVETEDYNEFDTELMTSKKKDKPEDPTIIEE
MTDL
K
KSVIRKVTLTSSPLWLKNKHVVQEEKPVIQEKSSFKKISLVSNVVTTKEKPPVKKPHFRKKKPTTEMKS
L
LQEPSLEEKYNTQEDASILKKPQVLQENTNNKDATLTEPVTFKGKHSANEATHTKKPSSSKNNPDPQGK
G
TNLRPLRVHPVTYENEPMSSKKSTTKKKDSHFHGPSVLPDKHSPQMEVSTVKKSLALPNPTTEEKMLHF
P
VATVLEKQHNMGEAPCLKKPSPLRKQQQLPKRRRFFSNSAVQETVIRKPLFFKMSTTEKDPPSQWPSAL
P
KKHISPGELSKQKKQHVSPKHNMEEDSQCWLDSAFKKQLSREEPASTHTPLKLEMQQAITKETGFHLRN
P
LVLPTVTSEAKSLTKEPPSFREQNTSLLKRKSTTHTITLQQAQSEWQEMTDEDRNLFSIKPGSHRKEPI
P
EFLQNPLPPNENCLISQKLSHSMPFASQKTTSQERAHRKESVASNDDKNFFSQDLFSPFSSADEDTLKF
H
KSLDFQEQVDRKNDSHKKMFDSQDSVSEEESFLRKLFCKDRCSSTEELSQERTVALEQEFLLIKILNEN
T
SSDVDEPLSHQSPHIQNHSDTTKEALEASEALEAPEALETLEALVASEDLEEPLNILEELSTENMVALM
K
MLVTEDESTKDSFSGNYTAAREAHAEKSLSLEETSINEAATLKESLSSQEKHRAELVTVLKELLVLMKN
P
SLKRVALAFQENPSNNVETLLREVLALVENSTADESTLQEKPSTKTDVTPKELLALEENSSNKKANPMD
S
LSFDHKPDTEMGEIARMVLTDEEYNIDTLYERVLALSQGLIAADQLSFTDLQNFEETKIVDEEEFFKSF
L
VFENKNSPNMSSNAFESRTDNSSAIMPSSKAFNPVENSNPYVSSSKSFKSTLGAKETE
ITIQDDSDSLE
R
IEKEGQDPLLNTIYAKDVFNYLKERE
EKFLVQKYMDGQMELTSDMRAILVDWLVEIQGSFQMTHETLYL
A
VKIMDLYLMKAQCKKNHLQLLGSTTYMIAAKFE
ESYPPSLSEFLFICEDMYEKSDMVSLESSILQTLNF
D
INIPTAYNFLRRYAS
CIHASMKTLTLSRFICEMTLQEYEYIEERPSKLAAASFILALYMRNLSNCVPTL
E
YFTGYKMAELHILVRKLNHLLNFRSHSILKNVFEKYSE
ETYFEVAKIPPLSKQDLENLLNCALFH



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser