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Report for CCDS37077.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37077.2 Public Mus musculus 15 Tbc1d31 23 108 98 CCDS HistoryNCBI Gene:210544Re-query CCDS DB by CCDS ID:37077.2See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37077.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37077.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022992.12 ENSMUSP00000022992.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022992.12Link to Ensembl Protein Viewer:ENSMUSP00000022992.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022992Re-query CCDS DB by Protein ID:ENSMUSP00000022992
Original member Current member NCBI NM_001081396.2 NP_001074865.2 Accepted alive Link to Nucleotide Sequence:NM_001081396.2Link to Protein Sequence:NP_001074865.2Re-query CCDS DB by Nucleotide ID:NM_001081396Re-query CCDS DB by Protein ID:NP_001074865Link to BLAST:NP_001074865.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074865.2 996 Q6NXY1-1 996 100% 0 0

Chromosomal Locations for CCDS 37077.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57912315 57912391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57915970 57916116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57919931 57920046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57922957 57923135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57932532 57932683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57936091 57936250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57937902 57938102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57940623 57940799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57942370 57942449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57942533 57942679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57948949 57949082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57950975 57951108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57951633 57951812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57952756 57952988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57953488 57953640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57955273 57955408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57958337 57958429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57960843 57960983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57963804 57963924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57967909 57968004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57969724 57969857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2991 nt):
ATGCAGAGCACTGACCTGGGCAACAAGGAGAGCGGCAAGATATGGCACCGCAAGCCATCGCCAGCCACTC
ACGACGGAATTATAGTGAACATTGTTCACAGCACTTCTGAATACCATCCCAAAGTCTTGCGGTTTTTGAA
TGTGGCTTTTGATGGCTCAGGCGATTCCTTCATTGCTGGGGACCATCAGGGAAACATCTATGTTTTTGAC
TTGCATGGAAACAGGTTTAATCTTGTTCAGCGAACAGCACAAGCGTGCACAGCTCTGGCCTTTAATCTTC
GTAGAAAGTCTGAGTTCCTTGTGGCGTTAGCTGATTATTCTATTAAATGTTTTGATACAGTCACCAAGGA
GCTGGTTAGCTGGATGAGAGGACACGAGTCGTCGGTGTGTTCCATTTCTGTGCACGCATCTGGGAGATAC
GCCATCACCACTTCCTCTGACACAGCTCAGCTCTGGGACTTGGATACTTTCCAGAGGAAGAGAAAGCTGA
ACATCCGCCAGTCGGTGGGCATACAGAAGGTTTTCTTTCTACCATTAAGTAACACCATCCTCAGCTGTTT
TAAAGACAACTCCATCTTCGCCTGGGAATGTGATACTCTGTTTTGCAAATACCAATTGCCAGGTCCACCT
GAGGGCTCTAACATCTTATACAAAGTGTTTGCTGTGACCAGAGATGGCCGAATCTTGGCTGCTGGAGGCA
AATCCAATCACCTGCATTTGTGGTGCTTGGAGGCCACAGGGCTCTTCAGAATCATTCAGATGCCTGCGAA
GGTACGAGCTGTTCGCCATCTGGAATTCCTGCCTGATAGCTTTGATGCCGGTTCCAATCAGGTTCTTGGT
GTGCTAAGTCAAGATGGGATTATGCGGTTTGTCAACATACAGACTTGTAAACTTCTCTTTGAAATTGGGA
CTGTTGAAGAAGGAATTAGCTCGTCAGTAATTAGTCCACACGGTCGGTACATAGCATCCATTATGGAAAA
TGGAAGTCTGAATGTATATTCAGTTCAGGCTTTAACACAAGAAATAAATAAGCCTCCTCCTCCTCTAGTT
AAGGTGATTGAAGATTTGCCCAGTAACACAGTGAGTTCCAGCAATCTTAAAATGAAGATAATGCCAGGAA
GAGTACAGCGGCCTGCAAGATGTAAAGAGAGCAAAATTCCAACCAGGGTGCTCAAGCAGGACCTGACTGG
GGACTTAGAAAACAAGGAGAATGAATTGTCAGAAGGATTAAATAAAAAGCGCTTACAAATCTTATTAAAA
GGCTATGGGGAATATCCAACAAAATACAGAATGTTTATCTGGCGTTCCTTACTACAGCTGCCGGAAAATC
ATACTGCATTTAGTAGCTTGGTGGACAAAGGGACTCATGCGGCTTATCTCAGCCTTCAGAAGAAATACCC
CATCAAAAGCAGGAAACTACTGAGAGTATTGCAGAGAACCCTCTCTGCATTAGCTCACTGGTCTGCAATC
TTCAGTGACACACCATACCTTCCACTCTTGGCATTTCCATTTGTAAAATTATTCCAGAACAATCAGCTCA
TCTGTTTTGAAGTTGTGGCTACTCTCATAATCAATTGGTGTCAACATTGGTTTGAGTACTTTCCTAATCC
TCCTATCAACATTCTTAGCATGATAGAAAATGTTTTGGCATTTCATGACAAGGAGCTGCTGCAGCACTTC
ATAGATCGTGATATAACTTCCCAGGTGTATGCCTGGCCTCTCCTGGAAACACTGTTCTCAGAAGTGCTGA
CGAGAGAGGAGTGGCTCCGCCTCTTCGATAACATCTTCTCCAATCACCCTTCCTTCCTCCTGATGACTGT
GGTGGCCTACAGTACCTGCTCCAGAGCGCCTTTGCTCAACTGTACTCTTAAGAATGACTTTGAGTATTTT
TTTCACCATCGGAATAACCTGGACATAAATGTTGTAATTAGAGAAGTTTATCATCTCATGGAGACAACGC
CTGCTGATATCCACCCAAATAGCATGCTGGATGCTTTCGTTGCACTGACGAAAGGGCAGTACCCTATATT
TAATCAATATCCAAAGTTCATTGTGGACTACCAGACACGGGAATGGGAAAGGATAAGGAACGATGAACTG
GACTTCTTGAGAGAGAGGCAGACAGTTGAAAATATGCAAGCTGAAGTGGATGAGCAGAGAGCTAAGGATG
AGGCGTGGTACCAGAAGCAGGAGCTGCTCCGCAGAGCTGAGGAGACAAGAAGAGAGATACTTCTTCAAGA
AGAGGAGAAGATGGCCCAGCAGAGACAAAGGCTAGCTGCCGTGAAAAGGGAACTGGAGATAAAGGAAATA
CACTTACAGGATGCTGCGAGGAGACGCTTGCTGAAGCTTCAGCAAGATCAACGGGAAATGGAGCTGCGCA
GGCTGGAGGATGAAATTGAGAGAAAGGTACAAATGAGAGATCAAGAAATCGCTGCCACAGCCAAGGACCT
GGAAATAAGGCAGCTGGAACTCGAAGCACAAAAGCGACTTTATGAGAAGGATCTTACTACAAGTCAAGAG
GCTGTTGCCAAAGAAATCCGAGAAGATACAGATGCCCATAGGCGGAAAGCGGCTCTGGAAGAACACATGT
TCCAGAAGCTGCTAGAGAACAGCCAGATGGGGGGCAGAAGGGCGCAGAGGTGGAAGGAAGCCGAAGAGAA
GGAATTCCATTTGCAATCAGCAAAGAAAGCCTCTGCCCTTTCAGATGCCTCTCGAAAGTGGTTTTTAAGG
CAGGAGACAAGTGCAGCTTTGGAGCATGAAGAAATGCCTTGGTTGCAAAGGCAGTACATGGACTCAGCCT
ATCTGCCTCAAACCTCACGATTACATGATGTTTCTGACATGGACCCCTCAACACACATTTTTTCAAGAAA
TTATCCAACAGAATGGAACCACATGGAACACGACCTTCTCAAGAACGTGCGAGATCTTCGCAGGAGACTC
ACAGCCCGGGCTCGGAACAGCTGTCGGCACCCTCATCTTTTGGTGACATAA

Translation (996 aa):
MQSTDLGNKESGKIWHRKPSPATHDGIIVNIVHSTSEYHPKVLRFLNVAFDGSGDSFIAGDHQGNIYVFD
LHGNRFNLVQRTAQACTALAFNLRRKSEFLVALADYSIKCFDTVTKELVSWMRGHESSVCSISVHASGRY
AITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVFFLPLSNTILSCFKDNSIFAWECDTLFCKYQLPGPP
EGSNILYKVFAVTRDGRILAAGGKSNHLHLWCLEATGLFRIIQMPAKVRAVRHLEFLPDSFDAGSNQVLG
VLSQDGIMRFVNIQTCKLLFEIGTVEEGISSSVISPHGRYIASIMENGSLNVYSVQALTQEINKPPPPLV
KVIEDLPSNTVSSSNLKMKIMPGRVQRPARCKESKIPTRVLKQDLTGDLENKENELSEGLNKKRLQILLK
GYGEYPTKYRMFIWRSLLQLPENHTAFSSLVDKGTHAAYLSLQKKYPIKSRKLLRVLQRTLSALAHWSAI
FSDTPYLPLLAFPFVKLFQNNQLICFEVVATLIINWCQHWFEYFPNPPINILSMIENVLAFHDKELLQHF
IDRDITSQVYAWPLLETLFSEVLTREEWLRLFDNIFSNHPSFLLMTVVAYSTCSRAPLLNCTLKNDFEYF
FHHRNNLDINVVIREVYHLMETTPADIHPNSMLDAFVALTKGQYPIFNQYPKFIVDYQTREWERIRNDEL
DFLRERQTVENMQAEVDEQRAKDEAWYQKQELLRRAEETRREILLQEEEKMAQQRQRLAAVKRELEIKEI
HLQDAARRRLLKLQQDQREMELRRLEDEIERKVQMRDQEIAATAKDLEIRQLELEAQKRLYEKDLTTSQE
AVAKEIREDTDAHRRKAALEEHMFQKLLENSQMGGRRAQRWKEAEEKEFHLQSAKKASALSDASRKWFLR
QETSAALEHEEMPWLQRQYMDSAYLPQTSRLHDVSDMDPSTHIFSRNYPTEWNHMEHDLLKNVRDLRRRL
TARARNSCRHPHLLVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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