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Report for CCDS27496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27496.1 Public Mus musculus 15 Mtss1 23 108 98 CCDS HistoryNCBI Gene:211401Re-query CCDS DB by CCDS ID:27496.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080371.7 ENSMUSP00000079239.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080371.7Link to Ensembl Protein Viewer:ENSMUSP00000079239.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000080371Re-query CCDS DB by Protein ID:ENSMUSP00000079239
Original member NCBI NM_144800.2 NP_659049.2 Updated not alive Link to Nucleotide Sequence:NM_144800.2Link to Protein Sequence:NP_659049.2Re-query CCDS DB by Nucleotide ID:NM_144800Re-query CCDS DB by Protein ID:NP_659049
Current member NCBI NM_144800.3 NP_659049.2 Accepted alive Link to Nucleotide Sequence:NM_144800.3Link to Protein Sequence:NP_659049.2Re-query CCDS DB by Nucleotide ID:NM_144800Re-query CCDS DB by Protein ID:NP_659049Link to BLAST:NP_659049.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659049.2 759 Q8R1S4-1 759 99.8682% 0 1

Chromosomal Locations for CCDS 27496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58943430 58944130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58945362 58945524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58945846 58946019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58947326 58947520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58951470 58951680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58953514 58953611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58955106 58955213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58956433 58956590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58964497 58964508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58968839 58968913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58970977 58971068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58972476 58972560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59055018 59055091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59058361 59058422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59081456 59081527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGGAGGCTGTGATCGAGAAGGAATGCAGCGCGCTTGGAGGCCTCTTCCAGACCATCATCAGCGACATGA
AGGGGAGCTATCCAGTTTGGGAAGACTTCATAAACAAAGCCGGAAAGCTACAGTCCCAGCTGCGGACAAC
AGTAGTAGCAGCAGCTGCCTTCTTGGACGCCTTTCAGAAAGTGGCTGACATGGCCACCAACACACGTGGT
GGTACCCGGGAGATCGGCTCAGCTCTCACCAGAATGTGCATGCGGCACCGGAGCATCGAGGCCAAGCTGA
GGCAGTTCTCCAGTGCTTTGATCGATTGCCTGATAAACCCACTGCAAGAACAAATGGAGGAATGGAAGAA
AGTGGCCAACCAGCTGGACAAGGACCACGCAAAAGAATATAAGAAAGCTCGACAAGAGATAAAAAAGAAG
TCCTCTGACACGCTGAAGCTGCAGAAGAAGGCAAAAAAAGTGGACGCTCAGGGGAGGGGCGACATCCAGC
CTCAGTTGGACAGCGCTCTCCAGGATGTCAACGATAAATACCTCCTGTTGGAGGAAACGGAGAAGCAGGC
TGTGCGCAAGGCACTCATCGAAGAACGAGGCCGGTTCTGCACCTTCATCTCTATGCTGCGGCCAGTGATC
GAGGAAGAGATTTCCATGTTAGGAGAGATTACCCACCTTCAGACCATATCGGAGGATCTGAAGAGCCTGA
CCATGGACCCTCACAAGCTGCCCTCCTCAAGTGAACAGGTGATTTTGGACTTGAAAGGTTCTGACTATAG
TTGGTCCTATCAGACGCCTCCTTCTTCTCCCAGTACAACTATGTCCAGAAAGTCAAGTGTCTGCAGCAGC
CTGAACAGCGTCAACAGCAGTGACTCCCGGTCCAGTGGCTCCCACTCGCACTCGCCCAGCTCGCATTACC
GGTACCGCAGCTCTAACCTGGCCCAGCAGGCCCCCGTGAGGCTGTCCAGCGTGTCCTCCCACGACTCAGG
ATTCATATCCCAGGACGCCTTCCAGTCCAAGTCACCCTCTCCCATGCCACCTGAAGCTGCCAACCAGTTG
TCTAATGGGTTTTCTCACTGTAGTTTATCAAGTGAGTCCCATGCAGGGCCCGTGGGTGCAGGCCCTTTCC
CTCATTGCCTGCCTGCCTCCCGCCTGCTCCCTCGGGTCACCTCTGTCCACCTTCCTGACTACGCTCATTA
TTACACCATTGGGCCCGGCATGTTCCCGTCATCTCAGATCCCTAGCTGGAAGGACTGGGCAAAGCCAGGA
CCCTATGACCAGCCACTGGTGAACACCCTCCAGCGCCGCAAAGAGAAACGTGAGCCAGACTCTAATGGGG
GAGGACCCACTACGACAGGAGGGCCACCTGCAGGTGCTGAAGAGGCGCAGAGACCAAGGAGCATGACGGT
GTCAGCTGCCACCAGGCCTGGTGAGGAGATGGCGGCCTGTGAGGAACTGACACTCGCCCTGTCCCGGGGC
CTCCAGCTGGACGTGCAGAGGAGCAGCCGGGACTCACTACAGTGCTCCAGCGGCTACAGCACCCAGACCA
CCACCCCGTGCTGCTCTGAGGATACCATCCCCTCCCAAGTTTCAGATTACGATTATTTCTCTGTAAGTGG
CGACCAGGAGGCAGAGCAGCAAGAATTCGACAAGTCCTCCACCATTCCAAGGAACAGTGACATCAGCCAG
TCTTACAGGCGGATGTTCCAAGCCAAGCGTCCAGCCTCAACGGCTGGCCTACCCACCACTCTCGGACCTG
CTATGGTCACACCAGGGGTGGCGACCATCCGACGGACCCCTTCCACCAAGCCTTCTGTCCGCCGGGGGAC
CATCGGAGCTGGTCCTATTCCCATCAAGACACCAGTGATCCCTGTCAAAACCCCAACTGTCCCAGACCTC
CCTGGGGTTTTGCCATCCCCTCCAGATGGGCCAGAGGAGCGGGGTGAGCACAGCCCCGAGTCTCCATCTG
CAGGGGAGGGGCCCCAGGGTGTCAGCAATATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCC
TCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACACAGACAGGCGATTCCAGAGAGCGAGGCTGAA
GACCAGGAAAGGGACCCCCCAAGTGCCACTGTCTCCCCAGGCCCGATTCCAGAGAGTGACCCCGCAGACC
TGAGCCCCAGAGAAAGTCCTCAGGGAGAAGACATGTTGAACGCCATCCGGAGGGGCGTGAAGCTGAAGAA
GACGACCACCAACGATCGCTCAGCACCGCGCTTCTCTTAG

Translation (759 aa):
MEAVIEKECSALGGLFQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRG
GTREIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKK
SSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISMLRPVI
EEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQVILDLKGSDYSWSYQTPPSSPSTTMSRKSSVCSS
LNSVNSSDSRSSGSHSHSPSSHYRYRSSNLAQQAPVRLSSVSSHDSGFISQDAFQSKSPSPMPPEAANQL
SNGFSHCSLSSESHAGPVGAGPFPHCLPASRLLPRVTSVHLPDYAHYYTIGPGMFPSSQIPSWKDWAKPG
PYDQPLVNTLQRRKEKREPDSNGGGPTTTGGPPAGAEEAQRPRSMTVSAATRPGEEMAACEELTLALSRG
LQLDVQRSSRDSLQCSSGYSTQTTTPCCSEDTIPSQVSDYDYFSVSGDQEAEQQEFDKSSTIPRNSDISQ
SYRRMFQAKRPASTAGLPTTLGPAMVTPGVATIRRTPSTKPSVRRGTIGAGPIPIKTPVIPVKTPTVPDL
PGVLPSPPDGPEERGEHSPESPSAGEGPQGVSNIPSSLWSGQAPVNPPLPGPKPSIPEEHRQAIPESEAE
DQERDPPSATVSPGPIPESDPADLSPRESPQGEDMLNAIRRGVKLKKTTTNDRSAPRFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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