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Report for CCDS30348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30348.1 Public Mus musculus X Gpr174 23 108 98 CCDS HistoryNCBI Gene:213439Re-query CCDS DB by CCDS ID:30348.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101294.8 ENSMUSP00000098852.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101294.8Link to Ensembl Protein Viewer:ENSMUSP00000098852.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101294Re-query CCDS DB by Protein ID:ENSMUSP00000098852
Original member Current member EBI ENSMUST00000117310.7 ENSMUSP00000112808.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117310.7Link to Ensembl Protein Viewer:ENSMUSP00000112808.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117310Re-query CCDS DB by Protein ID:ENSMUSP00000112808
Original member Current member EBI ENSMUST00000120971.7 ENSMUSP00000112974.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120971.7Link to Ensembl Protein Viewer:ENSMUSP00000112974.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120971Re-query CCDS DB by Protein ID:ENSMUSP00000112974
Original member Current member EBI ENSMUST00000118820.7 ENSMUSP00000113032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118820.7Link to Ensembl Protein Viewer:ENSMUSP00000113032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118820Re-query CCDS DB by Protein ID:ENSMUSP00000113032
Original member Current member EBI ENSMUST00000178838.1 ENSMUSP00000137372.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178838.1Link to Ensembl Protein Viewer:ENSMUSP00000137372.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178838Re-query CCDS DB by Protein ID:ENSMUSP00000137372
Original member Current member NCBI NM_001033251.5 NP_001028423.1 Accepted alive Link to Nucleotide Sequence:NM_001033251.5Link to Protein Sequence:NP_001028423.1Re-query CCDS DB by Nucleotide ID:NM_001033251Re-query CCDS DB by Protein ID:NP_001028423Link to BLAST:NP_001028423.1
Original member Current member NCBI NM_001177781.1 NP_001171252.1 Accepted alive Link to Nucleotide Sequence:NM_001177781.1Link to Protein Sequence:NP_001171252.1Re-query CCDS DB by Nucleotide ID:NM_001177781Re-query CCDS DB by Protein ID:NP_001171252Link to BLAST:NP_001171252.1
Original member Current member NCBI NM_001177782.1 NP_001171253.1 Accepted alive Link to Nucleotide Sequence:NM_001177782.1Link to Protein Sequence:NP_001171253.1Re-query CCDS DB by Nucleotide ID:NM_001177782Re-query CCDS DB by Protein ID:NP_001171253Link to BLAST:NP_001171253.1
Original member Current member NCBI NM_001358747.1 NP_001345676.1 Accepted alive Link to Nucleotide Sequence:NM_001358747.1Link to Protein Sequence:NP_001345676.1Re-query CCDS DB by Nucleotide ID:NM_001358747Re-query CCDS DB by Protein ID:NP_001345676Link to BLAST:NP_001345676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028423.1 335 Q3U507 335 100% 0 0
NP_001171252.1 335 Q3U507 335 100% 0 0
NP_001171253.1 335 Q3U507 335 100% 0 0
NP_001345676.1 335 Q3U507 335 100% 0 0

Chromosomal Locations for CCDS 30348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 107292584 107293591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGACTGATAATTTTACATGTAACAAGACAGATGGAGACAATACAGATTTCCGGTACTTCATTTATGCAG
TGACATACACTGTTATTCTTGTGCCAGGTCTTATAGGGAACATATTAGCCTTATGGGTATTTTACGGCTA
TATGAAAGAAACCAAAAGGGCTGTGGTATTTATGATAAACCTAGCCATTGCTGACTTATTACAGATTCTC
TCTCTGCCACTGAGGATCTTTTACTACTTGAACCATGACTGGCCATTTGGTCCTGGTCTCTGCATGTTTT
GTTTCTACCTGAAATATGTAAACATGTATGCCAGCATCTACTTCTTGGTCTGCATCAGTGTGCGAAGATT
TTGGTTTCTCATGTACCCCTTTCGTTTCAATGACTGCAAACAGAAATATGACTTGTATATCAGCATTATT
GGCTGGCTGATCATCTGCCTTGCCTGCCTGCTCTTTCCTCTCCTCAGAACCAATGATGATACTCCAGGTA
ACAGAACCAAATGCTTTGTGGATCTTCCTATCAGGAATGTTAATCTGGCCCAATCTGTTGCCATGATAAC
TATCGGAGAGGTGGTTGGGTTTGTTACTCCTCTTATGATTGTTTTATACTGTACCTGGAAGACAGCTTTG
TCATTACAAAATAAATATCCCATTTCTCAACATCTTGGAGAGAAAAAGAAAGCCCTGAAGATGATTCTGA
CCTGTGCAGGGGTGTTTCTAGTTTGCTTTGTACCTTATCACTTCAGCTTTCCTTTAGATTTCCTGGTTAA
GTCCAATGAAATTAAGAGTTGCTTTGCCAGAAGAGTGATTCTAATATTTCATTCTGTGGCCCTGTGTCTG
GCAAGCCTGAACTCCTGTCTTGACCCAGTTATATATTATTTTACCACTAATGAGTTCAGAAGACGCCTTT
CAAGACAAGATTTGCCTGATAACATCCAACTCCATACAAAATCATACAAAATTGCAAGTAACCATGCCAC
TTCTACCGTGGCAGCTGAACTATGTTAA

Translation (335 aa):
MTDNFTCNKTDGDNTDFRYFIYAVTYTVILVPGLIGNILALWVFYGYMKETKRAVVFMINLAIADLLQIL
SLPLRIFYYLNHDWPFGPGLCMFCFYLKYVNMYASIYFLVCISVRRFWFLMYPFRFNDCKQKYDLYISII
GWLIICLACLLFPLLRTNDDTPGNRTKCFVDLPIRNVNLAQSVAMITIGEVVGFVTPLMIVLYCTWKTAL
SLQNKYPISQHLGEKKKALKMILTCAGVFLVCFVPYHFSFPLDFLVKSNEIKSCFARRVILIFHSVALCL
ASLNSCLDPVIYYFTTNEFRRRLSRQDLPDNIQLHTKSYKIASNHATSTVAAELC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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