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Report for CCDS39642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39642.1 Public Mus musculus 6 Plekhg6 23 108 98 CCDS HistoryNCBI Gene:213522Re-query CCDS DB by CCDS ID:39642.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042647.6 ENSMUSP00000037004.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042647.6Link to Ensembl Protein Viewer:ENSMUSP00000037004.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042647Re-query CCDS DB by Protein ID:ENSMUSP00000037004
Original member NCBI NM_198604.2 NP_941006.2 Updated not alive Link to Nucleotide Sequence:NM_198604.2Link to Protein Sequence:NP_941006.2Re-query CCDS DB by Nucleotide ID:NM_198604Re-query CCDS DB by Protein ID:NP_941006
Current member NCBI NM_198604.3 NP_941006.2 Accepted alive Link to Nucleotide Sequence:NM_198604.3Link to Protein Sequence:NP_941006.2Re-query CCDS DB by Nucleotide ID:NM_198604Re-query CCDS DB by Protein ID:NP_941006Link to BLAST:NP_941006.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941006.2 787 Q8R0J1 787 100% 0 0

Chromosomal Locations for CCDS 39642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125362858 125362867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125363042 125363719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125364584 125364735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125370381 125370496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125370582 125370714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125372058 125372177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125372478 125372615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125372813 125372962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125373107 125373217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125374529 125374678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125374974 125375024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125375243 125375338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125375724 125375888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125377382 125377537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125378702 125378839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2364 nt):
ATGCAAGCCTTTGGTCCTCCAAATGAGGGCCCCCTCCAAGGCCTGGTAGCTTCCCGAATTGAGACTTACG
GGGGCCGTCATCAGACCTCTGCCCACAGCACTGCTGGGAATCTATTTCCCAGAGGAGGTCCTGGAGTGGA
CCCTAGTCGCCGACGCCTTCAGCACTATGTCCCCTTTGCCAAGGGCTCTGGCCAGACCCGAGGCATGTCT
CCTCTGGTGCTTCGGGAACCAGACCCAGAGAAGAGGCATGGAAGCTATTTTGGGGTCGGCCCACCTCACT
CCCCCAAACTCAAGGAAGTCACCAGGGCCCATGAGCTAGAAATAAGGCTGCACACATTCAGCATGTTTGG
GATGCCCCGCCTGCCACCAGAGGACCGGAGACACTGGGAGATAGGAGAGGGAGGCGATAGTGCCCTGACC
ATGGAAAAGTCCTGGAAGGAGCTGGTGCTGGAACACAAGGAGATGAACCGCCAGCTTTGCCACCAGCAGG
AAGCACTGTGGGAACTCCTGACCACTGAGCTGATCTACCTGAGAAAGCTCAAGATCATGACTGATCTCCT
GGCAGCTGGTCTGCTGAATTTGCAGCGGGTGGGGCTGCTGACTGAGGTGTCGGCTGAGACCCTGTTTGGA
AATGTCCCCAACCTGATTAGAGCCCACCGGAGATTTTGGGAGGAGGTGCTGCAGCCCATCCTGGAAGACA
CTCGCACCTCTGGCCAACCTTTGGATCCTGTCAGCTTACAAAATGGCTTCCTGACATTTGGCCAGCGGTT
CCAACCTTACGTCCAGTACTGCCTTCGAGTAAAGCAGACCATGGCTTATGCGCGGGAGCAGCAAGACACG
AACCCACTGTTCCACACCTTCGTGCAGTGGTGTGAGAAACACAAGCGCTCCGGAAGACAGACGCTGGGTG
ACTTGCTCATCAAGCCCCACCAGCGCATCACCAAATACCCACTGCTGCTGCAGGCTGTGCGCAAGAGAAG
CCCCGAGCCCCGAGCCCAAGAGGCCCTGAATGCCATGATCGAGGCTGTGGAGTCCTTCCTGCGACACATA
AATGGCCAGGTCCGACAGGGTGAAGAGCAGGAGAGTTTGATGGCTGTGGCCCAGCGCATAGGACCCTATG
AGGTGCTAGAGCCCTCCAGCGAGGAGGTGGAGAAGAACCTGCGTCCATTCTCCACCCTGGATCTGATGAC
TCCTGTACTAGGGGTTGCCCCTGAGTATACCAGGCAGCTGCTGCTGGAAGGACCTGTGCGGGTGAAGGAG
GGACGAGAAGGGAAGATGGATGTGTACCTATTTCTCTTCTCCGATGTGCTCCTGGTAACCAAACCTCAAC
GCAAGGCGGACAGAGCCAAGGTCATCCGTCCTCCCCTCATGCTGGAGAAACTCGTGTGCCGACCACTGCG
AGACCCCAACAGCTTCCTGTTGATCCACCTCACAGAATTCCAGTGTGTCTCCAGTGCCCTCACTGTGCAC
TGTCCCAGTTCTACAGAGCGTGCACGGTGGCTGGAGAAGACCCAGCATGCTCAGACCACTCTGCAGAAGC
TGAAGGGTGAGCAGTACATTCAACAGAAGAGGGAGCTGCTGGCCCTCTATCGCAACCAGGGCACGGAGTC
CCCCAGCACCAGGCCCTCCACACCTTCGCCTTCCCCGGAGGACTCCCAGAGCAGTGCCGAGGGGAGGACT
TTAGAGTTCGCCATCATCCCCCGCCTGGTGGTGACTGAGGATACAGATGAAGACACGCCCTCCATGCCGG
ATGACGCCTCAGACTCTGGCTACGGTACCTTGATTCCAAGCTCCCCGAAGGATTCTCATTCCCCCCTGAA
CAGGCTTCGGTCCAAGGCTCTTCGTAGAGACCCTCGCCTCACCTTCTCCACCCTGGAACTCAGAGACGTC
CCCTTGCGCCCCCAGCCTCCCGACCCCCAAGCTCCCCAGCGGCGAAGCGCCCCAGAGTTGCCAGAAGGGA
TCCTAAGAGGAGGCAGTCTACCCAGGAGAGCCCCACCAATCTGGTCGGAGGAGGAAGACGAGACTTTGGC
ATCAGGGAATGTGGTGGTAGAAACCCTACACAGGGCGCAACGTCGGAGTCCGCTCCCCCACTCTCCCACT
CATACTGACTCTGCTGGGGAAAGCCCCTGGGAGTCCTCAGATGAAGATGAGGGGCTTCTATCCCCTGAAC
TCCGCCCCCGCTCCCTACGGGAGGACATGCTCAGGGAGATCAGGGAGGAGCTGGCCAACCAAAGGATCGA
TGGAGCCTCGGAACCGGAACCAGGGAATGGCAAGCCCCGGAGGCTGACTCTAGCCCAGCTGCAGAGAATG
AGGGTCCCCCACATCATACAGCTGGACACGCCCCTGTCTACATCAGAAGTATAA

Translation (787 aa):
MQAFGPPNEGPLQGLVASRIETYGGRHQTSAHSTAGNLFPRGGPGVDPSRRRLQHYVPFAKGSGQTRGMS
PLVLREPDPEKRHGSYFGVGPPHSPKLKEVTRAHELEIRLHTFSMFGMPRLPPEDRRHWEIGEGGDSALT
MEKSWKELVLEHKEMNRQLCHQQEALWELLTTELIYLRKLKIMTDLLAAGLLNLQRVGLLTEVSAETLFG
NVPNLIRAHRRFWEEVLQPILEDTRTSGQPLDPVSLQNGFLTFGQRFQPYVQYCLRVKQTMAYAREQQDT
NPLFHTFVQWCEKHKRSGRQTLGDLLIKPHQRITKYPLLLQAVRKRSPEPRAQEALNAMIEAVESFLRHI
NGQVRQGEEQESLMAVAQRIGPYEVLEPSSEEVEKNLRPFSTLDLMTPVLGVAPEYTRQLLLEGPVRVKE
GREGKMDVYLFLFSDVLLVTKPQRKADRAKVIRPPLMLEKLVCRPLRDPNSFLLIHLTEFQCVSSALTVH
CPSSTERARWLEKTQHAQTTLQKLKGEQYIQQKRELLALYRNQGTESPSTRPSTPSPSPEDSQSSAEGRT
LEFAIIPRLVVTEDTDEDTPSMPDDASDSGYGTLIPSSPKDSHSPLNRLRSKALRRDPRLTFSTLELRDV
PLRPQPPDPQAPQRRSAPELPEGILRGGSLPRRAPPIWSEEEDETLASGNVVVETLHRAQRRSPLPHSPT
HTDSAGESPWESSDEDEGLLSPELRPRSLREDMLREIREELANQRIDGASEPEPGNGKPRRLTLAQLQRM
RVPHIIQLDTPLSTSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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