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Report for CCDS51663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51663.1 Public Mus musculus 5 Hip1 23 108 98 CCDS HistoryNCBI Gene:215114Re-query CCDS DB by CCDS ID:51663.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060311.11 ENSMUSP00000059033.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060311.11Link to Ensembl Protein Viewer:ENSMUSP00000059033.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060311Re-query CCDS DB by Protein ID:ENSMUSP00000059033
Original member Current member NCBI NM_146001.2 NP_666113.2 Accepted alive Link to Nucleotide Sequence:NM_146001.2Link to Protein Sequence:NP_666113.2Re-query CCDS DB by Nucleotide ID:NM_146001Re-query CCDS DB by Protein ID:NP_666113Link to BLAST:NP_666113.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666113.2 1029 Q8VD75 1029 100% 0 0

Chromosomal Locations for CCDS 51663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135411217 135411269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135412611 135412719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135414250 135414311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135416970 135417093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135420224 135420329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135422121 135422221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135424542 135424635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135424865 135424923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135426321 135426431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135428500 135428636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135428717 135428824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135429174 135429260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135430191 135430326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135431284 135431427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135431646 135431747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135433050 135433142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135434241 135434329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135435007 135435190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135436437 135436509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135438535 135438632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135440022 135440162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135440249 135440324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135444735 135444792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135449684 135449824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135451574 135451635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135452800 135452876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135455065 135455145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135457039 135457095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135458100 135458242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135460407 135460470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135544937 135545056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3090 nt):
ATGGACCGAATGGCCAGCTCCATGAAGCAGGTATCCAACCCGCTGCCCAAAGTGTTGAGCCGCCGCGGAG
TTGGTGCTGGGATGGAGGCTGCGGAGCGCGAGAGCTTCGAGCGGACTCAGACGGTCAGCGTCAATAAGGC
CATTAATACGCAGGAAGTGGCCGTGAAAGAGAAACATGCCAGGACGTGTATTCTGGGCACCCACCATGAG
AAAGGAGCGCAGACCTTTTGGTCTGTGGTCAACCGACTGCCTCTCTCCAGCAACGCCATGCTGTGCTGGA
AGTTTTGTCACGTGTTCCACAAACTTCTTCGAGATGGACATCCGAACGTGCTGAAAGACTCTCTGAGATA
CAAAAATGAGTTAAGCGACATGAGCAGGATGTGGGGCCACCTGAGCGAGGGGTATGGACAGCTTTGCAGC
ATCTACCTCAAACTGCTGAGAACAAGGATGGAGTACCACACCAAAAATCCCAGGTTCCCGGGCAACCTCC
AGATGAGTGACCGACAGCTGGATGAGGCCGGAGAAAGTGACGTTAACAACTTTTTTCAGCTCACAGTGGA
GATGTTTGATTACCTGGAGTGTGAACTGAACCTCTTCCAGACTGTGTTCAACTCCTTGGACATGTCCCGT
TCGGTGTCCGTGACCACGGCTGGCCAGTGCCGCCTCGCACCGCTCATCCAGGTCATCCTGGACTGCAGTC
ACCTCTATGACTACACTGTCAAGCTGCTCTTCAAGCTCCACTCCTGTCTTCCAGCTGACACCCTGCAGGG
CCACCGAGACCGCTTCATGGAGCAGTTCACAAAGTTGAAAGATCTGTTTCAGCGCTCCAGCAACCTACAG
TACTTCAAGCGGCTCATTCAGATCCCCCAGCTGCCCGAGAATCCACCCAACTTCCTACGAGCCTCGGCCC
TGTCAGAGCACATCAGTCCTGTGGTGGTGATCCCGGCAGAGGTGTCATCCCCAGACAGTGAGCCTGTCCT
GGAGAAGGATGACCTCATGGACATGGACGCCTCCCAGCAGACTTTGTTTGACAACAAGTTTGATGACGTC
TTTGGCAGCTCATTGAGCAGCGACCCTTTCAATTTCAACAATCAAAATGGCGTGAACAAGGACGAGAAGG
ACCACTTGATTGAACGCCTGTACAGAGAGATCAGTGGACTGACAGGGCAGCTGGACAACATGAAGATTGA
GAGCCAGCGGGCCATGCTGCAGCTGAAGGGTCGAGTGAGTGAGCTGGAGGCAGAGCTAGCAGAGCAGCAG
CACTTGGGCCGGCAGGCTATGGATGACTGCGAGTTCCTGCGCACTGAGCTGGATGAACTGAAGAGGCAGC
GAGAGGACACGGAGAAGGCACAGCGCAGCCTGACTGAGATAGAAAGAAAGGCCCAGGCTAATGAACAGAG
GTATAGCAAGTTAAAAGAGAAGTACAGTGAACTGGTGCAGAACCATGCTGACCTGCTGCGGAAGAACGCA
GAGGTGACCAAACAGGTGTCCGTGGCCCGGCAAGCCCAGGTGGATTTGGAAAGAGAGAAAAAAGAGCTAG
CAGATTCCTTTGCACGGACTCAAGAGCAACAGGATGTTCTAGAGAACCTGAAGCATGAACTGGCCACCAG
CAGACAGGAGCTGCAGGTCCTCCACAGCAACCTGGAAACCTCTGCCCAGTCAGAAGCGAAATGGCTGACA
CAGATCGCCGAGTTGGAGAAGGAACAAGGCAGCTTGGCGACTGTTGCAGCTCAGAGAGAGGAAGAGTTAT
CAGCCCTCCGAGACCAGCTGGAAAGCACCCAGATCAAGCTGGCTGGGGCCCAGGAATCCATGTGCCAGCA
GGTGAAGGACCAGAGGAAAACCCTCTTGGCAGGGATCAGGAAGGCTGCGGAGCGTGAGATACAGGAGGCG
CTGAGCCAGCTTGAGGAACCCACCCTCATCAGCTGTGCAGGATCCACAGATCACCTTCTCTCCAAAGTCA
GCTCCGTTTCCAGCTGCCTCGAGCAACTGGAAAAGAACGGCAGCCAGTATCTGGCCTGCCCAGAAGATAT
TAGTGAGCTTCTGCACTCGATCACCCTGCTTGCCCACTTGACCGGTGACACTATCATCCAGGGGAGTGCC
ACCAGCCTCCGGGCCCCACCGGAGCCAGCCGACTCGCTGACGGAGGCCTGTAGGCAGTATGGCAGAGAAA
CCCTGGCCTATCTGTCCTCCCTGGAGGAAGAGGGAACTATGGAGAATGCTGACGTCACAGCCCTTAGGAA
CTGCCTCAGCAGGGTCAAGACCCTTGGCGAGGAGCTGCTGCCCAGGGGCCTGGACATCAAGCAGGAAGAG
CTGGGTGACCTGGTGGACAAGGAGATGGCAGCCACTTCAGCTGCCATTGAAGCTGCCACCACCCGGATAG
AGGAAATTCTCAGTAAGTCCCGAGCAGGAGACACGGGAGTCAAGCTGGAGGTGAATGAGAGGATCCTGGG
TTCCTGTACCAGCCTGATGCAGGCCATCAAGGTGCTCGTTGTGGCCTCCAAGGACCTCCAGAAGGAGATA
GTGGAGAGTGGCAGGGGTACTGCATCCCCTAAAGAATTTTACGCCAAGAACTCTCGGTGGACGGAAGGGC
TGATATCCGCCTCCAAAGCTGTTGGTTGGGGAGCTACCATCATGGTGGATGCTGCTGATCTTGTGGTCCA
AGGCAAAGGGAAGTTCGAGGAGCTGATGGTGTGTTCACGCGAGATTGCTGCCAGTACTGCCCAGCTCGTG
GCTGCATCCAAGGTGAAAGCGAACAAGGGCAGCCTCAATCTGACCCAGCTGCAGCAGGCCTCTCGAGGAG
TGAACCAGGCCACAGCCGCTGTGGTGGCCTCAACCATTTCTGGCAAATCTCAGATTGAGGAAACAGACAG
TATGGACTTCTCAAGCATGACACTGACCCAGATCAAGCGCCAGGAGATGGATTCCCAGGTTAGGGTGCTG
GAGCTGGAAAATGACCTGCAGAAGGAGCGTCAGAAACTAGGAGAGCTACGGAAGAAACACTACGAGCTGG
CGGGCGTGGCTGAGGGCTGGGAGGAAGGGACAGAAGCATCACCGTCTACTGTCCAAGAAGCAATACCGGA
CAAAGAGTAG

Translation (1029 aa):
MDRMASSMKQVSNPLPKVLSRRGVGAGMEAAERESFERTQTVSVNKAINTQEVAVKEKHARTCILGTHHE
KGAQTFWSVVNRLPLSSNAMLCWKFCHVFHKLLRDGHPNVLKDSLRYKNELSDMSRMWGHLSEGYGQLCS
IYLKLLRTRMEYHTKNPRFPGNLQMSDRQLDEAGESDVNNFFQLTVEMFDYLECELNLFQTVFNSLDMSR
SVSVTTAGQCRLAPLIQVILDCSHLYDYTVKLLFKLHSCLPADTLQGHRDRFMEQFTKLKDLFQRSSNLQ
YFKRLIQIPQLPENPPNFLRASALSEHISPVVVIPAEVSSPDSEPVLEKDDLMDMDASQQTLFDNKFDDV
FGSSLSSDPFNFNNQNGVNKDEKDHLIERLYREISGLTGQLDNMKIESQRAMLQLKGRVSELEAELAEQQ
HLGRQAMDDCEFLRTELDELKRQREDTEKAQRSLTEIERKAQANEQRYSKLKEKYSELVQNHADLLRKNA
EVTKQVSVARQAQVDLEREKKELADSFARTQEQQDVLENLKHELATSRQELQVLHSNLETSAQSEAKWLT
QIAELEKEQGSLATVAAQREEELSALRDQLESTQIKLAGAQESMCQQVKDQRKTLLAGIRKAAEREIQEA
LSQLEEPTLISCAGSTDHLLSKVSSVSSCLEQLEKNGSQYLACPEDISELLHSITLLAHLTGDTIIQGSA
TSLRAPPEPADSLTEACRQYGRETLAYLSSLEEEGTMENADVTALRNCLSRVKTLGEELLPRGLDIKQEE
LGDLVDKEMAATSAAIEAATTRIEEILSKSRAGDTGVKLEVNERILGSCTSLMQAIKVLVVASKDLQKEI
VESGRGTASPKEFYAKNSRWTEGLISASKAVGWGATIMVDAADLVVQGKGKFEELMVCSREIAASTAQLV
AASKVKANKGSLNLTQLQQASRGVNQATAAVVASTISGKSQIEETDSMDFSSMTLTQIKRQEMDSQVRVL
ELENDLQKERQKLGELRKKHYELAGVAEGWEEGTEASPSTVQEAIPDKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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