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Report for CCDS25269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25269.1 Public Mus musculus 11 Samd14 23 108 98 CCDS HistoryNCBI Gene:217125Re-query CCDS DB by CCDS ID:25269.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055947.9 ENSMUSP00000062231.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055947.9Link to Ensembl Protein Viewer:ENSMUSP00000062231.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055947Re-query CCDS DB by Protein ID:ENSMUSP00000062231
Original member Current member NCBI NM_146025.2 NP_666137.1 Accepted alive Link to Nucleotide Sequence:NM_146025.2Link to Protein Sequence:NP_666137.1Re-query CCDS DB by Nucleotide ID:NM_146025Re-query CCDS DB by Protein ID:NP_666137Link to BLAST:NP_666137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666137.1 417 Q8K070 417 100% 0 0

Chromosomal Locations for CCDS 25269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95014364 95014406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95019361 95019527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95019930 95020218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95021198 95021285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95021386 95021460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95021549 95021708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95023259 95023378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95023460 95023615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95024578 95024733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGCTTCCTCAAAGCTCCGAGAACCTGTGGATGAAGTTTTTGACCTGGACTTGGCTGTACCAGAGACCA
CCAGACTGGACAGCAGCTTACACAAAGCCAGGGCTCAACTGCTGGCCAAGGGCCGGAGACACCGGCCTTC
CCGTTCCAGGCTACGAGACAGTGCCAGCTCTGCCGAGGACGGTGAAGGCTCTGATGGGCCCGGAGGCAAG
GTGACCGACGGCTGCGGTAGCCCGCTGCACCGGCTGCGCTCGCCTCTACATTCGGGTCCAGGCTCCCCAG
CCAGTGGATCTTTCTGCCTGGAGCCCCCGGGCTTGAGGCGCAGTCTGGATGAGGACGAACCGCCGCCCTC
GCCACTCGCTCGGTACCGGCCCCTGCACAACGCCGCCTCGCATGAGGGCCTGGCCGCCACCTCCGGCTCG
CCACCACGCTCTGCACCCTCCTCCGACAGCTCCCCCAGCTTCGTGCGTCGTTACCCTCGAGCAGAGCCGC
ACAGCGAAGATGACAGCCGGGATGCCAGCCCCCCTGAGCCTGCCAGCCCCACCATCGGCTTGGACAAGAA
GACTCGCAGGAAATTCCTGGACCTGGGGGTCACTCTCCGCCGAGCATCCACCAGCAGGAGCAGGAAGGAG
AAGGGTAGCAACCGCCTGTCCATGGGCAGCAGGGAGTCTGTAGAAGGTTCTGGAAGGACAGGAAGCTCCC
CGTTCCTGCCCTTTTCCTGGTTCACGGACAGCGGCAAGGGCTCTGCTTCCTCGGGGAGTACCACCTCCCC
GACCTGTTCCCCCAAACACGAGGGCTTCAGCCCCAAGAAGTCAGCTTCCCAGGAATCTACCCTGAGCGAT
GACTCCACACCCCCCAGCAGCAGCCCCAAGATCCCCGGTGGTCCTCGACAGGAGACCAAGTGTTCCTATC
CCTACCACACGCTGTCCCAGTCTTCGGATGAGTTCCTGGATGAGTCCCTCCCTGCCGTACAACACTGGAC
CAGCCAGCAGGTGGGCCAGTGGCTACACAGCCTCAACCTGGAGCAGTATGCTGCCGAGTTTGCTGCCCGG
CAGGTGGATGGGCCGCAGCTCCTGCAGCTGGACGGAAGCAAACTGAAGAGCCTGGGGCTCAGCAATTCGC
ATGACCGAGCACTGGTGAAGCGGAAGTTGAAGGAGCTGGCAGCGGCTGCTGAGAAGGAACGGAAGGCGCA
GGAGAAGACCGCAAAGCAGCGGGAGAAGCTGCGGCGCCGCGAGAACGATGCCAAGAAGAGCTAG

Translation (417 aa):
MASSKLREPVDEVFDLDLAVPETTRLDSSLHKARAQLLAKGRRHRPSRSRLRDSASSAEDGEGSDGPGGK
VTDGCGSPLHRLRSPLHSGPGSPASGSFCLEPPGLRRSLDEDEPPPSPLARYRPLHNAASHEGLAATSGS
PPRSAPSSDSSPSFVRRYPRAEPHSEDDSRDASPPEPASPTIGLDKKTRRKFLDLGVTLRRASTSRSRKE
KGSNRLSMGSRESVEGSGRTGSSPFLPFSWFTDSGKGSASSGSTTSPTCSPKHEGFSPKKSASQESTLSD
DSTPPSSSPKIPGGPRQETKCSYPYHTLSQSSDEFLDESLPAVQHWTSQQVGQWLHSLNLEQYAAEFAAR
QVDGPQLLQLDGSKLKSLGLSNSHDRALVKRKLKELAAAAEKERKAQEKTAKQREKLRRRENDAKKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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