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Report for CCDS25488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25488.1 Public Mus musculus 11 Nags 23 108 98 CCDS HistoryNCBI Gene:217214Re-query CCDS DB by CCDS ID:25488.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055409.5 ENSMUSP00000050258.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055409.5Link to Ensembl Protein Viewer:ENSMUSP00000050258.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055409Re-query CCDS DB by Protein ID:ENSMUSP00000050258
Original member Current member NCBI NM_145829.2 NP_665828.1 Accepted alive Link to Nucleotide Sequence:NM_145829.2Link to Protein Sequence:NP_665828.1Re-query CCDS DB by Nucleotide ID:NM_145829Re-query CCDS DB by Protein ID:NP_665828Link to BLAST:NP_665828.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665828.1 527 Q8R4H7-1 527 100% 0 0

Chromosomal Locations for CCDS 25488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102145587 102145991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102146490 102146764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102146863 102147076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102147364 102147544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102147810 102147981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102148092 102148274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102148918 102149071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGCGACGGCGTGGGTGGCCACAGCCCTGCGGTCTGCTGCAGCGGCCAGAAGGTTGCGCAGCCCGGGAG
GTCCTGGGGGCTCACGGAGACTGAGTGGCAGCGCGCGGCGGCGCGGGGCAAAGAGCGCCAGCCCGGGACG
CCGGCTCAGCACCGCCAGGGCTCACGCAGAGGACGCCGAGGGCGCTAAGGGTCGTGTCCAGTCTCCTGCG
GTCGAGGAGCCGTCGTGGACACCGCTTCCAACGCCCCTCGAATCCCCTGCGCCTCCCGCCGGCAGATCAC
TGGTGCAGCGGGACATCCAGGCCTTCCTGAACCAGTGTGGTGCCAGCCCGGGGGAAGCACGCCACTGGCT
CACGCAATTCCAGACCTGCTACCATTCGGTGGACAAGCCCTTCGCCGTCATGGAGGTCGATGAGGAGGTG
ATCCGGTGCCCGCAGGCGGTATCCCGCCTGGCTTTCGCCCTGGCCTTCTTGCAACGCATGGACATGAAGC
CACTGGTGGTTCTGGGGCTGCCTACCCCCACGGCACCTTCTGGCTGTCTTTCCTTCTGGGAAGCTAAGGC
GCAGCTTGCTCAGAGCTGCAAGGTGCTGGTGGATGAACTAAGGCACAACGCGGCTACTGCTGTGCCCTTT
TTTGGCGGCGGATCAGTACTGAGCGCTGCGGAGCCAGCTCCCCATGCCAGCTACGGTGGCATCGTCGCGG
TGGAGACAGACCTGTTGCAGTGGTGTCTGGAATCCAACAGCATCCCCATCCTGTGCCCCATTGGGGAAAC
GGCTGCGCGCCGTTCCGTGCTCCTTGACTCGCTGGAGGTGACTGCATCTCTAGCCAAGGCTTTGCAGCCC
ACCAAAATCATCTTCCTCAATAATTCAGGCGGCCTGCGGAATAACAGTCAGAAGATCCTGAGCAACGTGA
ACCTGCCCGCTGACCTTGACCTTGTTACCAACGCTGAGTGGCTGAGCATCAAAGAGCGGCAGCAGATTCG
GCTCATCGTGGACGTGCTGAGCCGCCTGCCGCACTACTCCTCCGCAGTCATTACAGCCGCTAGCACGCTG
CTCACGGAACTCTTTAGTAACAAGGGCTGTGGCACCCTGTTTAAAAATGCTGAGCGGATGCTGCGAGTGC
GCAACCTGGACAGCCTGGACCAGGGCCGCCTAGTGAACCTAGTCAACGCCAGCTTCGGCAAGAAGCTCCG
AGAAGACTATCTGGAGTCACTGCGCCCTCGGTTGCACTCGATCTATGTCTCTGAGGGGTACAACGCGGCA
GCCATTCTGACAGTGGAACCTGTACTAGGGGGCACCCCATATCTGGACAAATTTGTGGTGAGCTCCAGCC
GCCAGGGCCAAGGTTCTGGACAGATGCTGTGGGAATGCCTTCGGAGAGACCTGCAAACGTTGTTCTGGCG
CTCAAGGGTCACCAATCCCATCAATCCCTGGTACTTCAAGCACAGTGACGGTAGCTTCTCCAACAAGCAG
TGGATCTTCTTCTGGTTCGGCCTGGCCGACATCCGAGACTCCTACGAACTAGTCAATCATGCCAAGGGGC
TGCCGGACTCTTTCTGCAAACCAGCTTCTGACCCAGGCAGCTGA

Translation (527 aa):
MATAWVATALRSAAAARRLRSPGGPGGSRRLSGSARRRGAKSASPGRRLSTARAHAEDAEGAKGRVQSPA
VEEPSWTPLPTPLESPAPPAGRSLVQRDIQAFLNQCGASPGEARHWLTQFQTCYHSVDKPFAVMEVDEEV
IRCPQAVSRLAFALAFLQRMDMKPLVVLGLPTPTAPSGCLSFWEAKAQLAQSCKVLVDELRHNAATAVPF
FGGGSVLSAAEPAPHASYGGIVAVETDLLQWCLESNSIPILCPIGETAARRSVLLDSLEVTASLAKALQP
TKIIFLNNSGGLRNNSQKILSNVNLPADLDLVTNAEWLSIKERQQIRLIVDVLSRLPHYSSAVITAASTL
LTELFSNKGCGTLFKNAERMLRVRNLDSLDQGRLVNLVNASFGKKLREDYLESLRPRLHSIYVSEGYNAA
AILTVEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQ
WIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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