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Report for CCDS36620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36620.1 Public Mus musculus 13 Slc17a2 23 108 98 CCDS HistoryNCBI Gene:218103Re-query CCDS DB by CCDS ID:36620.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006786.10 ENSMUSP00000006786.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006786.10Link to Ensembl Protein Viewer:ENSMUSP00000006786.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006786Re-query CCDS DB by Protein ID:ENSMUSP00000006786
Original member NCBI NM_144836.2 NP_659085.1 Updated not alive Link to Nucleotide Sequence:NM_144836.2Link to Protein Sequence:NP_659085.1Re-query CCDS DB by Nucleotide ID:NM_144836Re-query CCDS DB by Protein ID:NP_659085
Current member NCBI NM_144836.3 NP_659085.1 Accepted alive Link to Nucleotide Sequence:NM_144836.3Link to Protein Sequence:NP_659085.1Re-query CCDS DB by Nucleotide ID:NM_144836Re-query CCDS DB by Protein ID:NP_659085Link to BLAST:NP_659085.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659085.1 447 Q5SZA1-2 447 100% 0 0

Chromosomal Locations for CCDS 36620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23810800 23810827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23812542 23812753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23814866 23815099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23815186 23815273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23817521 23817607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23819018 23819136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23819249 23819410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23819864 23819996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23820082 23820229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23820985 23821109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23822295 23822302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGATGAGAAGCCTACCACCAGGAAAGGGTCAGGTTTCTGCTCATTACGCTACGCGCTGGCTCTCATCA
TGCACTTCTCCAACTTCACCATGATAACGCAGCGTGTGAGCCTGAGCATTGCCATCATTGCCATGGTGAA
CAGCACACAGCATCAGGACCCAGCTAATGCGTCCACGGAGGGGCCTGTGATGGATCTCCTCAGCAACCAG
AGCAGAGGAATCAAGGACTTTAGTACCCGGGCTGCTGTCTATCAGTGGAGCACAGAGACCCAGGGCATTA
TCTTTAGCTCCATCAGCTATGGAATCATACTGACGTTAATACCAAGTGGATATTTAGCGGGGATATTTGG
AGCAAAGCAGATCCTTGGCGCTGGGTTGCTCATCTCATCCCTGCTCACGCTGTTTACTCCACTGGCTGCT
GACTTTGGGGTGATTTTGGTCATTGTCATTCGCACAGTCCAGGGGATGGCACAGGGAATGGCCTGGACTG
GTCAGTTCACAATTTGGGCAAAGTGGGCTCCGCCACTTGAACGGAGCAAGCTCACCAGCATTGCGGGTTC
AGGGGCAGCGTTTGGGTCCTTCATCATCCTCTGTGTGGGAGGATTAATCTCACAGGCACTGGGCTGGCCT
TTTATCTTCTACATCTTTGGTAGCATTGGCTGTGTCTGCTGTGTCCTGTGGTTCACGGTGATTTATGATG
ACCCCATGCATCACCCATGCATAAGTGTGAGGGAAAAGGAACACATCACATCCTCAGTGGCTCAGCAGTC
GAGTTCTCCCAGAAGGTCTGTCCCCATAAAGGCGATGGTCAGATGCCTGCCACTGTGGGCCATTTTCATG
GGTTTTTTCAGTCATTTCTGGCTTTGCACCATAATCATAACATACCTACCGACGTACATCAGCACAGTGC
TGCACGTTAACATCAGAGACAGTGGGGTTCTGTCCTCCCTGCCTTTCATTGCTGCCTCAAGCTGTACAAT
TTTAGGAGGTCAGATGGCAGATTTCCTTCTCTCCAGGAATCTTCTCAGCTTAATCACAGTTCGAAAACTC
TTTTCATCCCTGGGGCTCCTCCTTCCATCCCTTTGCGCTGTGGCCCTGCCTTTTGTGACTTCCAGTTACA
TAGCAACCATTGTTTTGCTGATACTCATTCCTGGGACCAGCAATTTGTGTGACTCAGGGTTCATCATCAA
CACCCTAGACGTTGCCCCCAGATATGCAAGTTTCCTCATGGGCATCTCAAGGGGATTTGGTCTTACTGCA
GGGATCATCTCATCCACTACCACCGGATTCCTTATCAGTCAGGTTGGGCATGTTATTGAACATCTGCAAG
TGGCAGGATTCTGA

Translation (447 aa):
MDEKPTTRKGSGFCSLRYALALIMHFSNFTMITQRVSLSIAIIAMVNSTQHQDPANASTEGPVMDLLSNQ
SRGIKDFSTRAAVYQWSTETQGIIFSSISYGIILTLIPSGYLAGIFGAKQILGAGLLISSLLTLFTPLAA
DFGVILVIVIRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTSIAGSGAAFGSFIILCVGGLISQALGWP
FIFYIFGSIGCVCCVLWFTVIYDDPMHHPCISVREKEHITSSVAQQSSSPRRSVPIKAMVRCLPLWAIFM
GFFSHFWLCTIIITYLPTYISTVLHVNIRDSGVLSSLPFIAASSCTILGGQMADFLLSRNLLSLITVRKL
FSSLGLLLPSLCAVALPFVTSSYIATIVLLILIPGTSNLCDSGFIINTLDVAPRYASFLMGISRGFGLTA
GIISSTTTGFLISQVGHVIEHLQVAGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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