NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39640.1 Public Mus musculus 6 Tuba3a 23 108 98 CCDS HistoryNCBI Gene:22144Re-query CCDS DB by CCDS ID:39640.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088246.5 ENSMUSP00000085580.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088246.5Link to Ensembl Protein Viewer:ENSMUSP00000085580.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088246Re-query CCDS DB by Protein ID:ENSMUSP00000085580
Original member Current member NCBI NM_009446.3 NP_033472.1 Accepted alive Link to Nucleotide Sequence:NM_009446.3Link to Protein Sequence:NP_033472.1Re-query CCDS DB by Nucleotide ID:NM_009446Re-query CCDS DB by Protein ID:NP_033472Link to BLAST:NP_033472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033472.1 450 P05214 450 100% 0 0

Chromosomal Locations for CCDS 39640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125278358 125278654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125280970 125281650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125282353 125282501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125282756 125282978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125285968 125285970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGCGTGAGTGTATCTCTATCCACGTGGGGCAGGCAGGTGTCCAGATCGGCAATGCCTGCTGGGAACTGT
ACTGCCTTGAACATGGCATTCAGCCTGACGGTCAGATGCCAAGCGACAAAACCATTGGCGGCGGGGACGA
CTCATTCAACACATTCTTCAGTGAGACTGGAGCCGGCAAGCACGTGCCCAGGGCAGTGTTTGTGGACCTG
GAGCCCACTGTGGTGGATGAGGTGCGCACGGGAACCTACCGGCAGCTTTTTCACCCAGAGCAGCTGATCA
CTGGAAAGGAAGATGCAGCCAATAATTATGCCAGAGGCCACTACACCATCGGCAAAGAGATTGTCGACCT
GGTCCTGGATCGAATCCGAAAGCTGGCCGATCTGTGCACGGGACTGCAGGGCTTCCTCATCTTCCACAGC
TTTGGAGGAGGCACAGGGTCTGGGTTTGCATCGCTGCTGATGGAGCGGCTTTCAGTGGACTATGGCAAGA
AGTCCAAGCTGGAGTTTGCCATCTACCCAGCCCCCCAGGTTTCTACAGCGGTCGTGGAGCCTTACAACTC
CATCCTGACCACGCACACCACCCTAGAGCATTCCGACTGTGCTTTCATGGTGGATAACGAAGCCATCTAC
GACATCTGCCGGCGCAACCTGGATATTGAACGTCCCACATACACCAACCTCAATCGTCTGATTGGGCAGA
TTGTGTCGTCCATTACAGCCTCCCTGAGGTTTGATGGCGCCCTGAATGTGGACTTAACAGAATTCCAGAC
CAACCTGGTGCCATACCCTCGCATCCACTTCCCACTGGCAACCTACGCCCCGGTCATCTCAGCTGAGAAG
GCATACCATGAGCAGCTGTCAGTGGCAGAGATCACCAATGCTTGCTTCGAGCCAGCCAATCAGATGGTCA
AGTGTGACCCTCGCCACGGCAAATACATGGCCTGCTGCATGTTGTACCGGGGGGATGTGGTTCCCAAAGA
TGTCAACGCGGCTATTGCAACCATCAAGACAAAGCGCACCATCCAGTTTGTAGATTGGTGTCCGACTGGA
TTTAAGGTGGGTATTAACTACCAGCCTCCCACTGTGGTCCCTGGGGGAGACCTGGCCAAAGTGCAGCGGG
CCGTGTGCATGCTGAGCAATACCACGGCCATCGCAGAGGCCTGGGCCCGCCTGGACCACAAATTTGACCT
CATGTACGCCAAGCGAGCCTTTGTGCATTGGTACGTGGGAGAAGGCATGGAGGAAGGGGAGTTCTCCGAG
GCCCGGGAGGACCTGGCAGCGCTGGAGAAGGACTATGAAGAGGTGGGCGTGGATTCCGTGGAAGCAGAGG
CAGAAGAAGGGGAGGAGTACTGA

Translation (450 aa):
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL
EPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHS
FGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY
DICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK
AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDLAALEKDYEEVGVDSVEAEAEEGEEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH